Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0441 ATGGAAGAGAAGCACAAATGCAAGCTCTGTTCCAGAACCTTCGCCCACGGCAGATCACTTGGAGGCCACATGAAATCCCATTTCGCCACTCTGCCACTTCCACCAAAACCCCAACCACCACCATCACCTTCATTCTCATCTTCTTCCTCCCAAAATTCCGACGACGACAAATCTCTGATTTACACTCTCAGAGGAAATCCCAAAAAAAGCTTCAAGCTCGCAGATCCCAATTCCTCTGTTCCTGTTCAAGACAGAGAAAGCGAAACCGAGTCAAAATCCCCAACTCGCCTCCGATCCAAGCGAAGAATCAGAACAACAACCCAGAAATTAGCTTCACCAAAGAAGCCTAAACAACCGAATAATCTCTCCGATGTGAGTTCTGCTTCTGAAACGAGCACTGAAGAAGATGTTGCTATGTGCCTCATTATGCTCTCCAGAGACAAATGGAAGAGAAAAGAAGGAGAAGATCGAGAGAGAGGAGGAGAGAAATTGAAGCGATTTGATGAGATGAAGGTGAAGAAAGGAGTTCGTGGGAAGCATCAATGTGAGAAATGCAGAAAAACGTTTCGGTCGTTTCGAGCATTAGGGAGTCATAGAAACGTTTGTTTTGGTGAAGAAGAAGAAGGAAGAAACGGTTCGGTTTTTGAATGCCCGTTTTGTTTTAAGGTATTCGGGTCGGGTCAAGCGCTTGGTGGGCATAAGAGATCTCATCTGGTTCAGTTTTCTTCATCATCATCAACTTTGAATAATGATTCTGCAAATTTAATGATCAAAGAAAGCTTCATAGATCTCAACTTGCCAGCTCCACCAATAGGAGGAGCAGAAGATGAACTCAGTGTGGTTTCTGATGCATGA 855 0.4421 MEEKHKCKLCSRTFAHGRSLGGHMKSHFATLPLPPKPQPPPSPSFSSSSSQNSDDDKSLIYTLRGNPKKSFKLADPNSSVPVQDRESETESKSPTRLRSKRRIRTTTQKLASPKKPKQPNNLSDVSSASETSTEEDVAMCLIMLSRDKWKRKEGEDRERGGEKLKRFDEMKVKKGVRGKHQCEKCRKTFRSFRALGSHRNVCFGEEEEGRNGSVFECPFCFKVFGSGQALGGHKRSHLVQFSSSSSTLNNDSANLMIKESFIDLNLPAPPIGGAEDELSVVSDA 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0441 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
Mibi10g0441 284 SUPERFAMILY beta-beta-alpha zinc fingers 180 237 IPR036236 -
Mibi10g0441 284 SUPERFAMILY beta-beta-alpha zinc fingers 2 30 IPR036236 -
Mibi10g0441 284 SMART c2h2final6 5 27 IPR013087 -
Mibi10g0441 284 SMART c2h2final6 215 237 IPR013087 -
Mibi10g0441 284 SMART c2h2final6 180 200 IPR013087 -
Mibi10g0441 284 Pfam C2H2-type zinc finger 180 199 - -
Mibi10g0441 284 Pfam C2H2-type zinc finger 5 27 - -
Mibi10g0441 284 Pfam C2H2-type zinc finger 214 237 - -
Mibi10g0441 284 ProSitePatterns Zinc finger C2H2 type domain signature. 217 237 IPR013087 -
Mibi10g0441 284 MobiDBLite consensus disorder prediction 109 131 - -
Mibi10g0441 284 MobiDBLite consensus disorder prediction 45 59 - -
Mibi10g0441 284 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 284 IPR044303 GO:0006355
Mibi10g0441 284 MobiDBLite consensus disorder prediction 18 131 - -
Mibi10g0441 284 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Mibi10g0441 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 180 207 IPR013087 -
Mibi10g0441 284 ProSiteProfiles Zinc finger C2H2 type domain profile. 215 237 IPR013087 -
Mibi10g0441 284 Gene3D Classic Zinc Finger 177 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0441 Mibi-ChrMibi10 7480662 7481516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g0441 3 281 C2H2 Transcription Factor Family AT3G60580 36.306 5.46e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mibi10g0441 zf-C2H2_6 1.1e-09 CL0361