Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0412 ATGCTCTCAAATCACGATTTCGGCTTAAATCTAAGCCTAAGCTTCCCTCACACTGCTCTCAATCCATCCAAATCTTCAGATCGGTGTTCTGAAGGATGCAGAGGCGAAACTCGGTCGTCAGTCGGTGGAATCGACGTGAATCGGTTGCCATCGGAGGTCGATTGTGAAGAGGAGGCTGGAATTTCGTCTCCGAACAGTACGATTTCGAGTGTGAGTGGCAAGCGGAGCGAGAGAGATGAAGAGAATGAAACAGATCGAGCTTATTCTCGAGGAATTAGCGATGATGAAGACAACGAAGCTTCTAGAAAGAAACTCAGGCTGTCGAAAGATCAGTCAGCTGTTCTAGAAGAGAGTTTCAAAGAGCACAATACTCTGAATCCTAAGCAAAAATTGGCGCTGGCGAAGCAGTTAGGGCTTAGGCCTAGGCAAGTGGAGGTGTGGTTTCAAAATAGAAGAGCAAGGACGAAGCTGAAGCAAACGGAGGTGGATTGTGAGTTTTTGAAGAGGTGTTGTGAGAATCTGACGGAGGAGAATAGGCGGTTGCAGAAAGAGGTGCAAGAGCTGAGAGCACTGAAACTTTCCCCACAGCTGTACATGCAAATGACTCCACCCACTACTCTCACTATGTGCCCATCTTGTGAGAGGTTTGGTGGCCGGCCCATTTCTATCAGCCCATGGGCCGTTCCCCAGCCCAACTCACATCTCGTTCGTCCAAGGTCGTGA 723 0.4896 MLSNHDFGLNLSLSFPHTALNPSKSSDRCSEGCRGETRSSVGGIDVNRLPSEVDCEEEAGISSPNSTISSVSGKRSERDEENETDRAYSRGISDDEDNEASRKKLRLSKDQSAVLEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQLYMQMTPPTTLTMCPSCERFGGRPISISPWAVPQPNSHLVRPRS 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0412 240 Pfam Homeodomain 102 156 IPR001356 GO:0003677
Mibi10g0412 240 ProSitePatterns 'Homeobox' domain signature. 133 156 IPR017970 GO:0000981|GO:0006355
Mibi10g0412 240 MobiDBLite consensus disorder prediction 73 107 - -
Mibi10g0412 240 PRINTS Lambda-repressor HTH signature 129 138 IPR000047 GO:0003677
Mibi10g0412 240 PRINTS Lambda-repressor HTH signature 138 154 IPR000047 GO:0003677
Mibi10g0412 240 SUPERFAMILY Homeodomain-like 94 159 IPR009057 -
Mibi10g0412 240 Pfam Homeobox associated leucine zipper 158 192 IPR003106 GO:0006355|GO:0043565
Mibi10g0412 240 SMART halz 158 201 IPR003106 GO:0006355|GO:0043565
Mibi10g0412 240 Pfam HD-ZIP protein N terminus 25 79 IPR006712 GO:0005634
Mibi10g0412 240 SMART HOX_1 100 162 IPR001356 GO:0003677
Mibi10g0412 240 Coils Coil 157 194 - -
Mibi10g0412 240 FunFam Homeobox-leucine zipper protein 18 89 163 - -
Mibi10g0412 240 MobiDBLite consensus disorder prediction 13 28 - -
Mibi10g0412 240 CDD homeodomain 102 159 IPR001356 GO:0003677
Mibi10g0412 240 Gene3D - 106 156 - -
Mibi10g0412 240 ProSiteProfiles 'Homeobox' domain profile. 98 158 IPR001356 GO:0003677
Mibi10g0412 240 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 8 217 - -
Mibi10g0412 240 MobiDBLite consensus disorder prediction 13 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0412 Mibi-ChrMibi10 6650957 6652496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g0412 1 228 Homeobox Transcription Factor Family AT5G47370 60.985 6.66e-98 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mibi10g0412 Homeodomain 1.1e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1573 12 31574765 31576157 Mibi10g0412 10 6650957 6652496 CCT