Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0400 ATGGCAAACCCTGTTGAACTTTCAGCTCTGGATCGTATAAAATTGCATCTTCTAGGTGAACTCTCTCCTGTTGCCACTTTCTCCAGTGGCTTTATCAGTTCAAACAGAGCAATTTCCAGCTCTGAATCTGACTCTATATATACCCAATCATCGAATTCTGACTCTTCCATCACTGTTTCTAATTACCTTCCTGAAATCTTCGAATTCCCATCCATCTCCACAAATCTATCTGACTTCGATTTCAACAACCAGGTCATCGACCTCTCAACCCCCAAATTCCAAACCAAAACTCTACAATTCCAAGAAAACTCACAGTACAACAATTCCATGTTCGAGTTTCAGAACACATCTCAATCAAATCGTAAACCATCGTTGCAAATCACGCTTCCCAAAAAAACCGAGTGGATCCAATTCGGAAATCCAGATCAACAACAACAAGATTCAAACGTGTCCGTGCAGACTAATTCAACCATTGAAGAGAAGAGACACTACAGAGGAGTACGACAACGACCATGGGGAAAATTCGCCGCCGAGATTCGAGATCGAAACAAGCGTGGATCTAGGGTTTGGCTTGGAACTTTCGACACGGCGATTGACGCAGCAAAAGCATACGATAGAGCAGCGTTTAGGCTTCGAGGATCAAAAGCGATACTCAATTTCCCTCTGGACGTAGAAACATCCGGCACGGCGGAGAGGAAACGCCGGCGAGGAGATGATGACGTGGCGGTTCAAATGGAGGAAGTGAAACCAGTGGTGAAGAAAGAGAAGATGGTGGAATCTGATGAGGTGGGAAGGATAAGGGATATGCCATTAACGCCGTCAATGTGGACGGGGTTCTTGGACAATGATTTGAAGGATGTTTTCTCTGTGCCGCCGTTGTCGCCGTTATCTCCTCACCCTCCTTTGGGATTTCCTCAGCTCATGGTTGTATGA 933 0.4544 MANPVELSALDRIKLHLLGELSPVATFSSGFISSNRAISSSESDSIYTQSSNSDSSITVSNYLPEIFEFPSISTNLSDFDFNNQVIDLSTPKFQTKTLQFQENSQYNNSMFEFQNTSQSNRKPSLQITLPKKTEWIQFGNPDQQQQDSNVSVQTNSTIEEKRHYRGVRQRPWGKFAAEIRDRNKRGSRVWLGTFDTAIDAAKAYDRAAFRLRGSKAILNFPLDVETSGTAERKRRRGDDDVAVQMEEVKPVVKKEKMVESDEVGRIRDMPLTPSMWTGFLDNDLKDVFSVPPLSPLSPHPPLGFPQLMVV 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0400 310 Gene3D AP2/ERF domain 162 223 IPR036955 GO:0003700|GO:0006355
Mibi10g0400 310 CDD AP2 163 221 IPR001471 GO:0003700|GO:0006355
Mibi10g0400 310 ProSiteProfiles AP2/ERF domain profile. 163 221 IPR001471 GO:0003700|GO:0006355
Mibi10g0400 310 SUPERFAMILY DNA-binding domain 163 223 IPR016177 GO:0003677
Mibi10g0400 310 FunFam Ethylene-responsive transcription factor 2 162 222 - -
Mibi10g0400 310 Pfam AP2 domain 163 213 IPR001471 GO:0003700|GO:0006355
Mibi10g0400 310 PRINTS Ethylene responsive element binding protein signature 203 223 IPR001471 GO:0003700|GO:0006355
Mibi10g0400 310 PRINTS Ethylene responsive element binding protein signature 164 175 IPR001471 GO:0003700|GO:0006355
Mibi10g0400 310 PANTHER DNA-BINDING DOMAIN 116 235 IPR044808 GO:0003700|GO:0009873
Mibi10g0400 310 SMART rav1_2 163 227 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0400 Mibi-ChrMibi10 6404962 6405894 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g0400 1 310 AP2-EREBP Transcription Factor Family AT5G47230 43.865 1.43e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mibi10g0400 AP2 3.2e-15 CL0081