Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0382 ATGGTTAAGCAAGGGCCTTGCTATCACTGTGGAGTTACTAGCACACCACTTTGGCGCAATGGGCCACCAGAGAAGCCAGTGCTATGCAATGCATGTGGATCTCGATGGAGAACAAAGGGAACTCTAGCAAATTATACCCCTTTACATGCTCGGACAGAAGCCGATGATTTTGAGGATCAAAGGTTTTCTAAGGCAAAGAACATATCATTATATAAGAACAAAGAGATGAAATTACTCAAACGAAAGCAGAACCATGATAATTTAGTAACTGGTTGGGTTACCCCTGATTACAACCACGGATCTCTAAAGGTTATAGATGAAGATGCAAGCAATAGATCAAGTTCTGGATCAGCTGTCTCTAACTCAGAGAGCTGTGCTCAATTTGCTGGAACAGATGCTAGTGAGTTGATAGGTCCTGCTCAGTCAGTGGTGGGGGGTGGTATGGTGCCCTCAAGAAAGAGAACCTGTGTGAACCGCCAAAAGCCGTCTTCTGTTGAGAAGCTCACAAAAGATTTATATACTATACTTCATGAACAGCAGTCAAATTTCTCTGCATCTTCTGAAGAGGATCTAATTTTTGAGAGTGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAAGTGTTCTCATTAGGCATCCTAGCTCCATAGCCCGTGAAGAAGAATCTGAGGGTAGCTCCCTTTCAGTTGATAACAAACAATGCCCAACGAGCGAGGCATATTCATGCTCTGGTGCTGTAGATACGCATAATGATTTCACTGGCATGAACTTTCCATCTCACAGAGTTGAAAATGTCAACTACTCCGCTGGCCAAGGATTTCTGCGGGAGAAACTCAATAGGGAGCTTGAAACTTCACAAATCCTTGGATATCATGATTCACCAATGTGCCTGATAGATTTAGTTGATGTTGTAAACTATGAGGTGTTCTTGACAAACATGACAAAGGAGGAGCAGCAAAAATTACTGAAGTTTCTCCCTGCCGTTGATACCGCTAAACTTCCTGATAGCCTTAAAAGCATGTTCAACAGCTCTCAGTTCAGAGAGAACTTAAGTTACTTTCAACAGCTTCTTGGGGAAGGTGTCTTTGATTTTGATAGCTCTTCATCGGAGGAAAAAGCTGGAGACTGCCAGGCTTTCAAAAGGCTTGCATTATGTGATTTTTCACAGTCAAAATGGGTGGAACAATATGATCTACTTAAGAGATGTAAATATAGAGATGAAAAACCTGTTCGTCTTGGATGCACTGGCTTTGCATCCAGCAATGCTGCGAATGAGAAGAGATTATGTGACAACGGCTCTAAACGGAGTTTTCCTGAACTGAGGTCAACAGTTAGGAGCCCCAAAAGAGTGATGATGAAGGCTGATAGTGAGGACAAGGAAGTCTTTGAAGATGGCTCTAGCTTCGGTCCAAATGGCTTATTGGCTTTGCCCTCTGATGGCAGCCCCCAAATGCTGGATTCTTTCAACCTTGTTGATGAGAGTTCCGATCAAGATCTTCTGCTCGAAGTGCGATCTAACAGTTATTTCCCAGAAGCAGAACTTCTGCCTACAGACTTAAGATTTGGTACTCAGCCCAGAACTAGCAGCATCTATGGCCATTACTGA 1608 0.4316 MVKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARTEADDFEDQRFSKAKNISLYKNKEMKLLKRKQNHDNLVTGWVTPDYNHGSLKVIDEDASNRSSSGSAVSNSESCAQFAGTDASELIGPAQSVVGGGMVPSRKRTCVNRQKPSSVEKLTKDLYTILHEQQSNFSASSEEDLIFESETPMVSVEIGHGSVLIRHPSSIAREEESEGSSLSVDNKQCPTSEAYSCSGAVDTHNDFTGMNFPSHRVENVNYSAGQGFLREKLNRELETSQILGYHDSPMCLIDLVDVVNYEVFLTNMTKEEQQKLLKFLPAVDTAKLPDSLKSMFNSSQFRENLSYFQQLLGEGVFDFDSSSSEEKAGDCQAFKRLALCDFSQSKWVEQYDLLKRCKYRDEKPVRLGCTGFASSNAANEKRLCDNGSKRSFPELRSTVRSPKRVMMKADSEDKEVFEDGSSFGPNGLLALPSDGSPQMLDSFNLVDESSDQDLLLEVRSNSYFPEAELLPTDLRFGTQPRTSSIYGHY 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0382 535 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Mibi10g0382 535 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Mibi10g0382 535 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 292 403 IPR044867 -
Mibi10g0382 535 Pfam Asx homology domain 280 375 IPR028020 -
Mibi10g0382 535 PANTHER OSJNBB0038F03.10 PROTEIN 7 522 IPR044589 -
Mibi10g0382 535 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Mibi10g0382 535 Gene3D - 3 87 IPR013088 GO:0006355|GO:0008270
Mibi10g0382 535 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Mibi10g0382 535 Gene3D - 291 384 IPR038108 -
Mibi10g0382 535 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 45 - -
Mibi10g0382 535 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0382 Mibi-ChrMibi10 6142732 6147628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g0382 1 516 C2C2-Gata Transcription Factor Family AT4G17570 50.186 3.02e-139 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mibi10g0382 ASXH 2.1e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1603 12 31927032 31932425 Mibi10g0382 10 6142732 6147628 CCT