Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0332 ATGCCAGTTCCACTTGCCCCTTACCCTACACCCCCAGCTCCATATACCCCTCCAGCTAATGGTACACAACAGAGTCAGCTTGTGTGTTGTGGGTGTAGAAACCTTCTGCTCTATCCAGTTGGAGCAACATCTGTGTGCTGTGCTGTTTGTAATGCAGTCACTCAAGTGCCACCTCCTGGCACGGAAATGGCACAGTTGGTTTGTGGAGCCTGCCACACATTACTCATGTACATACGTGGAGCGACAAGCGTGCAATGTTCCTGCTGTCACATTGTCAATCTAGCATTGGAAGCAAATCAGGTGGCACATGTCAATTGTGGAAACTGTAGAATGCTACTGATGTACCAGTATGGAGCAAGATCTGTTAAATGTGCAGTCTGCAATTTTGTTACATCTGTTGGGGCCTCAGGAAGCACAATTGAGCAGAAGTTCAGCACCTAA 441 0.4785 MPVPLAPYPTPPAPYTPPANGTQQSQLVCCGCRNLLLYPVGATSVCCAVCNAVTQVPPPGTEMAQLVCGACHTLLMYIRGATSVQCSCCHIVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASGSTIEQKFST 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0332 146 Pfam LSD1 zinc finger 29 53 IPR005735 -
Mibi10g0332 146 Pfam LSD1 zinc finger 106 130 IPR005735 -
Mibi10g0332 146 Pfam LSD1 zinc finger 68 92 IPR005735 -
Mibi10g0332 146 PANTHER PROTEIN LSD1 15 55 IPR040319 -
Mibi10g0332 146 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 65 94 IPR005735 -
Mibi10g0332 146 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 103 133 IPR005735 -
Mibi10g0332 146 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 26 56 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0332 Mibi-ChrMibi10 5361814 5364020 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Mibi10g0332 zf-LSD1 6.3e-09 No_clan