Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0329 ATGGATTCACGCGAACCGCCTCATCATCATCATCATCATCAACAACAACAACAACAGCCGCAATTACAGCCCATGTCACAATCACAACCTCAACCACCGATGATGATGGGACCCACTTCTTATGGTTCCGTTTTGCCTAACCCCAACAACACATCTTCCAACATGATCAGCCCCAATTCCACGGCGGCGATGATGTCTCCGGCCACCGCCGCACGATTCCCTTTCAACACTGTCGTCCCTCAGCCTCCTGCTCCGTCGAACAACAATGCTAATGTTAGTCCTTTTGATGGGTCGTCGAATGCGATTAGGCCTTGTGGGTTCAATATTGATTCGACTAAGAAGAAGAGAGGAAGGCCGAGGAAGTATTCGCCTGATGGTAACATTGCTTTGGGTTTGTCCCCTACGCCTATGACTAATGCTTCTGCTGGTCAAGGAGATTCTGGTGGTACTCCTTCCACTGAGCCTGGGAATAAGAAGCATAGGGGAAGGCCTCCGGGTTCTGGGAAGAAGCAGCTGGATGCTCTTGGAGCTGGTGGGGTTGGTTTTACTCCGCATGTAATATCGGTGAATGCTGGGGAGGACATTGCTGGAAAGATTGTGGCCTTTTCACAGCAAGGGCCTAGGACAGTTTGTATTCTTTCTGCTAGTGGCGCGGTCAGCAATGTTACCCTTAGACATTCAGCAATTTCTGGCGGTACTGTGCAATATGAGGGTCGATTTGAGATCATATCTCTAGCAGGTTCATTCCTGCCATGTGATGATAGTGGTCACAACAGAACAGGTGGTTTCAGTGTGTCTCTTGCGGGGTCAGATGGTAAGGTTGTAGGTGGCGGAGTTGCTGGAATGTTAATAGCTGCATCACCAGTGCAGGTCATTGTGGGTAGCTTTATTGTTGATGGGAAAAAGTCAAGCTCAAATGCTCAGAAATCGGGGCCTTCTTCAGCACCAGCCTCCCAGATGTTAAATTTTGGTGCACCAACGACTTCTACTAGCCCTACCTCTCAAGGCCCTTCAACTGATGAGTCCTCTGAGGAGCATGACAATAATGGTGATTTTAATAGGGGACCTGGACTCTACAATAATAATAGCCAGCCCCTTCATAATTTGCCGATGTATCATCCTCAACTATGGGCTGGTCAAACCCAGCAGTGA 1152 0.4878 MDSREPPHHHHHHQQQQQQPQLQPMSQSQPQPPMMMGPTSYGSVLPNPNNTSSNMISPNSTAAMMSPATAARFPFNTVVPQPPAPSNNNANVSPFDGSSNAIRPCGFNIDSTKKKRGRPRKYSPDGNIALGLSPTPMTNASAGQGDSGGTPSTEPGNKKHRGRPPGSGKKQLDALGAGGVGFTPHVISVNAGEDIAGKIVAFSQQGPRTVCILSASGAVSNVTLRHSAISGGTVQYEGRFEIISLAGSFLPCDDSGHNRTGGFSVSLAGSDGKVVGGGVAGMLIAASPVQVIVGSFIVDGKKSSSNAQKSGPSSAPASQMLNFGAPTTSTSPTSQGPSTDESSEEHDNNGDFNRGPGLYNNNSQPLHNLPMYHPQLWAGQTQQ 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0329 383 CDD DUF296 183 296 IPR005175 -
Mibi10g0329 383 SMART AT_hook_2 113 125 IPR017956 GO:0003677
Mibi10g0329 383 SMART AT_hook_2 158 170 IPR017956 GO:0003677
Mibi10g0329 383 MobiDBLite consensus disorder prediction 301 339 - -
Mibi10g0329 383 SUPERFAMILY AF0104/ALDC/Ptd012-like 182 297 - -
Mibi10g0329 383 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 37 345 IPR039605 GO:0003680
Mibi10g0329 383 MobiDBLite consensus disorder prediction 16 63 - -
Mibi10g0329 383 MobiDBLite consensus disorder prediction 132 154 - -
Mibi10g0329 383 MobiDBLite consensus disorder prediction 76 175 - -
Mibi10g0329 383 MobiDBLite consensus disorder prediction 301 367 - -
Mibi10g0329 383 ProSiteProfiles PPC domain profile profile. 178 317 IPR005175 -
Mibi10g0329 383 MobiDBLite consensus disorder prediction 1 63 - -
Mibi10g0329 383 Pfam Plants and Prokaryotes Conserved (PCC) domain 184 296 IPR005175 -
Mibi10g0329 383 Gene3D - 184 309 - -
Mibi10g0329 383 MobiDBLite consensus disorder prediction 82 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0329 Mibi-ChrMibi10 5313641 5318871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g0329 95 383 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 49.851 4.22e-76 240