LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi10g0279	ATGAGGGACATCATGTGTTACTACTCTTCAGGAAAATTAGTGGTGGCTGTGTGTCTGATGATCTCATTATGCGGAACTTGCAAGGCATCAGATGGAACACAGAACTGTTCAAGTTTGTGCGGAGATCACAACATTAGCAGCCCTTTTCGGGTAAAAGAATCTCCAGAGAAGTGTGGTGACAAGAAGTATGAGCTATCTTGCGAGAAGAACCAACTGTTCCTGTATTTGGAATCTATGAGATACAGAGTTTTGTCCATTAATTATTCTGTCGAAACAATCCGAGTGAGGGACGTTAGTATTGAGGTATTGAATTCATCTTCCCTTCCTCAGTATTCTTTAACAGGCTACAACTTAAGCGGAGGGTATCTTTATACCTCCTATTCTAATAATATAACGATATACGTAAGGTGTGAACACCCAATGGATTCCCCTGGGTTTGTGGACACGGCCCCTTGCTTCAACACCTCAAATGGCTCTCTATCTTCTTCTTCTTCATCGAATTTGTATGTCTATGTTGGGAGCGGATATTTAAGTTATATGGGGTTAGAGGATGGTTGTCTAATAGAAATGATGTATCTCACTTCCTGGTCTGATCCGAAAAACCAGTCCTTGTCCTGCACACACATCCACACTATACTTCTTTATGGCTTTGAGCTTTCTTGGGAACTTTTCATTGAAAACTATAGCATTTGGAAACAGATCCTTTGGGCTATCACAGACTATTGGACATACATCCAGGCTCTGATAGTATTAGCTATGTATAGTGGTGCTAAATTTGTGTTGGGGGCTCCGTTTGTCATTTACCTTTTGATCTACAAATGGCGAAGAAGGCATTTATCAGTGTATGACAGCATTGAAGATTTTCTGCAAAGCGACAGCAACAGCATCATGCCTATAAGGTACTCATATAGAGACATCAAGAAGATGACCAAAGGGTTTAAAATAAGACTTGGGAAAGGAGGCTATGGCTCTGTCTTCAAAGGAAAACTTCGAAGTGGCCGTGATGTGGCTGTCAAGATGCTGGATAAGGCTGAAGCCAATGGTCAGGATTTCATAAATGAAGTTGCTACACTTGGTAGAATCCACCATGTAAATGTTGTGCATCTCATTGGTTATTGTGTGGAAGGATCAAAACGTGCTCTTATCTATGAATTCATGCAAAATGGATCTCTTGACAAACATATTCTCTCTAAAAATGCTGACAATGAGCAATCCTTGGATCTTCATCAATTGTATACCATTTCTCTTGGAGTAGCTCGTGGTATTCAATATCTTCACAAAGGATGTCATATGCAAATTCTACATTTTGATATAAAGCCACACAACATCCTTCTCGATGACAACTTCAACCCAAAGGTTTCTGATTTCGGCCTTGCTAAACTCTATCCCACAAATGATAGCATTGTGTCACTCACAGCAGCAAGAGGAACTATAGGATACATGGCTCCTGAGCTCTTCTACAAAAATGTAGGCAGAGTCTCCTATAAAGCTGATGTCTATAGCTTTGGGATGTTATTAATGGAGATGGCTGGCAGAAGGAAGAATTTGAATGTGTTTGCCGAGCAATCGAGTCAACTTTATTTCCCTTTTTGGGCTTATGATCAACTAAATGAAGGAAATGAAATTAGCATAGCAGATGCAACAGAGGAAGAAATGAAAGTGGCAAGGAAAATGGTGATTGTTGCCTTGTGGTGCATTCAAACCAAGCCTAGCAATCGTCCTTCAATGAACAAAGTTGTCGAGATGCTTGAAGGAGAAGAGAAGGACTTAGAATTGCCTCAAAAGCCTTATCTATACCCACAAGATTTACCAGCAACTGATGATAATGATAATCATTCAACACATCAATCCAAGTCAAGCAGTCATCCATCAATGAACAAAGCTGTGGAGATACTTGAAGTAGAGGAGAAAGAGTTAGTATTGCCTCACCAGCCTTTTCAATTCACACAAGATTCACCAACAGTTGATGTTAGTGATCATTTATGTTCAACGCCTCCATCTTATGATCCTCCAATGAAGAATTCTAAAGAAACAACCTCGTTTTTAACTAAACAAGATGAGAGATCAATATAA	2073	0.398	MRDIMCYYSSGKLVVAVCLMISLCGTCKASDGTQNCSSLCGDHNISSPFRVKESPEKCGDKKYELSCEKNQLFLYLESMRYRVLSINYSVETIRVRDVSIEVLNSSSLPQYSLTGYNLSGGYLYTSYSNNITIYVRCEHPMDSPGFVDTAPCFNTSNGSLSSSSSSNLYVYVGSGYLSYMGLEDGCLIEMMYLTSWSDPKNQSLSCTHIHTILLYGFELSWELFIENYSIWKQILWAITDYWTYIQALIVLAMYSGAKFVLGAPFVIYLLIYKWRRRHLSVYDSIEDFLQSDSNSIMPIRYSYRDIKKMTKGFKIRLGKGGYGSVFKGKLRSGRDVAVKMLDKAEANGQDFINEVATLGRIHHVNVVHLIGYCVEGSKRALIYEFMQNGSLDKHILSKNADNEQSLDLHQLYTISLGVARGIQYLHKGCHMQILHFDIKPHNILLDDNFNPKVSDFGLAKLYPTNDSIVSLTAARGTIGYMAPELFYKNVGRVSYKADVYSFGMLLMEMAGRRKNLNVFAEQSSQLYFPFWAYDQLNEGNEISIADATEEEMKVARKMVIVALWCIQTKPSNRPSMNKVVEMLEGEEKDLELPQKPYLYPQDLPATDDNDNHSTHQSKSSSHPSMNKAVEILEVEEKELVLPHQPFQFTQDSPTVDVSDHLCSTPPSYDPPMKNSKETTSFLTKQDERSI	690

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi10g0279	690	Gene3D	Transferase(Phosphotransferase) domain 1	386	595	-	-
	Mibi10g0279	690	MobiDBLite	consensus disorder prediction	648	690	-	-
	Mibi10g0279	690	Pfam	Wall-associated receptor kinase galacturonan-binding	36	97	IPR025287	GO:0030247
	Mibi10g0279	690	Gene3D	Phosphorylase Kinase; domain 1	286	385	-	-
	Mibi10g0279	690	FunFam	PR5-like receptor kinase	386	594	-	-
	Mibi10g0279	690	FunFam	serine/threonine-protein kinase PBS1-like	281	385	-	-
	Mibi10g0279	690	MobiDBLite	consensus disorder prediction	591	625	-	-
	Mibi10g0279	690	Pfam	Protein tyrosine and serine/threonine kinase	315	583	IPR001245	GO:0004672\|GO:0006468
	Mibi10g0279	690	ProSitePatterns	Protein kinases ATP-binding region signature.	317	339	IPR017441	GO:0005524
	Mibi10g0279	690	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	283	608	IPR045874	GO:0004672
	Mibi10g0279	690	ProSiteProfiles	Protein kinase domain profile.	311	598	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi10g0279	690	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	433	445	IPR008271	GO:0004672\|GO:0006468
	Mibi10g0279	690	SMART	serkin_6	311	583	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi10g0279	690	SUPERFAMILY	Protein kinase-like (PK-like)	290	584	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi10g0279	Mibi-ChrMibi10	4473715	4476485	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi10g0279	8	599	Receptor kinase-like Gene Family	AT5G38260	34.961	7.34e-108	339

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Mibi10g0279		PK_Tyr_Ser-Thr	1.1e-46	CL0016