Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0209 ATGGGAGAGAATGGTGTATCACCATGTGCGTTGTTGGATTCGTCCATAGATTTTGATTACATGGAAGAAATTTTCTCAGATGGATGCTGGTTGGAAACGGCAGCTGATGGATCTGATTTCTTGCTTCGAAGCCCTCCTGCTGCGGCTAATCCTCTTTTAGACTCATCATTTTCATGGCCTGCCTTGGAAAATAATGGCCATGTGAGTCTAGAACAAAGGCAGAGTCCTTTGATTGGTGACTACCAGGAAGCACAAACCAATAATAATAGATCGGTTTGTAAAGGCAAGGACATAATAGAAGTTTCTGGGACTGTTGGTAATATGTCTGAAATTCGTACAGCTGAAAACTCAGAAGTTGTTAGGAGGTGTTGGATTGGACCTATGGCTAATCCAAGCCCTGAGTGTTCTGTGTTGGAGAGACTAATTAAGGCACTTGTGTATATCAGAGATTACAATAGGGACAAAGATATGCTTTTGCAGTTATGGGTGCCGGTTAATAGGGAGGGTGGGAGGATTCTAATCACTCGTGATTTTCCCTTCTCGCTTGAGAGTACAAGTCCAAATCTTGCTAAGTATAGAGAAATCTCAACCAAATTTCATTTTCCAGCCGAGGGGTATTCTGGGGGGTTGCTGCCTGGATTGCCTGGTCGAGTTTTTAAAGAGAAGGTTCCTGAGTGGACTCCTGATGTTCAGCTTTTCAGGAGTGATGAGTACCCTCGTGTTGACCATGCTCAAGAGTATGATGTGCGTGGATCTTTAGCAATTCCAGTCTTTGAGAAATGTAGCAACACTTGCTTGGGTGTTATTGAGGTTGTAATGACATCCCAGAAGATCATGTATTTCCCTGAGCTTGATAGTGTTTGCAAAGCACTTCAGGCTGTTGATCTTAGAAGCAAAAATATATCAAGTATACAGAATGTGAAGGAATGCAACAATTCCTATGAAGCTGCACTGCCTGAGATCCAAGAGGTTTTGAGATCTGCATGTGAAACGCACAAATTACCTTTAGCTCAAGCCTGGGTTCCATGTATCAAGCAAGGCAAAGAGGGGTGCCGGCACACAGATGATAATTATATACACTGTATATCTCCTGTTGAGCATGCGTGTTATGTTGGTGATCCTTCCGTCCAGGTTTTTCATGAGGCTTGCTCTGAGCATCACTTGTTAAAAGGTCAAGGTGTCACTGGTGAAGCTTTTACGACCAATCAATCATGCTTCTCAACTGATGTCACTTCCTATAGCAAGACAGATTATCCTCTATCTCATCATGCAAGGATTTTTGGGTTGCGAGCTGCTGTTGCTTTACGCCTGCGAAGCATCCATAACAGTACAGATGATTTTGTACTTGAGTTCTTCTTGCCTGTAACATGCACTGACTGTGAAGAACAGAAGAAGATGCTCACTTCATTGTCCATGATTATACAGAGGGTTTGCCATAGCCTGCGGGTGATAAGCAATAAAGAATTGGAGGAGGAAGCCAGCTTATCAATGGATGAAGTGACAGTCCCTGCAGAGAGTAGATCTGCTAGGATGGAGTTCCAACAATGCAGGAACATTACTTCACATGGCACCAAAGAAAAGTCAAACGAAACTTTGACTAGACAGGTGTCTAACCTGAGTCAGCAAGAAGACACTATTTTAAAAGAAAACCTTGACTATGGTTGGGAGTGTTCTTCTTTTGGTGAGGGTGGCTTGCCAATTGCAGGTTTAAGTAAAACGGGAGACAAAAGACGGACCAAAGCAGAGAAAACTATCACCTTGCAAGTTCTTCGGCAATATTTTGCAGGAAGCCTAAAAGATGCTGCAAAGAATATTGGTGTTTGTACTACAACTTTGAAAAGAATCTGTCGCCAACATGGGATAAAGCGGTGGCCTTCTCGAAAGATTAAAAAGGTTGGCCACTCCCTGCAGAAACTTCAACTTGTCATAGACTCAGTTCAAGGTGCCTCCAGTGCTTTTCAGATAGATTCGTTCTACTCAAAGTTTCCGGAGTTAGCATCCCCAAATTTGCCAGGAAGCAGCTTGTTCTCAACTTCAAAGCAAAGCGATCTCCCAAATCCATCAACCACAAGGGCTGATACTGGCTTGCTGAGCCCAGAAGCGCCTTCATCTTCATGCAATCAAAGTTCCAGTTCAAGCCATTCCTCTTCCAACATGTCAGAGTTTCAGCTTCATGCACAAAATATTGCTGGTGGAAAAATTCCCGGGGTTGGGGAAGATTCTGCTGATGGGGTTATGAAGAGGGTTCCAAGTGAATTAGGGCTAAAAAGCTTAAGTCAAGATACAGCAGAGCTCTTGCCAACATCCCAAAGCCAGGAAACACCTTGTGTACATCCAAAAACTGTGTTGAAAAGCAGTCATATAGCGCACCCAAAAGAAGATACTCACAGAGTAAAAGTCACTTTCAGAGAGGAGAAAACCCGATTTCGGATGCCAAAGAGTTGGCATTATGAAGAACTTTTGTGGGAAATTGCTTGGAGATTCAACATAGATGACATGCGCAAATTTGATATAAAATATCTGGACGATGATTCTGACTGGGTTTTGCTAACTTGTGATGCTGATTTAGAGGAGTGCATTGATGTTTGTCAACATTCTCAGAGCAGTACCATCAAACTTTTCCTTCAGGATAGTAAATCATAG 2643 0.4283 MGENGVSPCALLDSSIDFDYMEEIFSDGCWLETAADGSDFLLRSPPAAANPLLDSSFSWPALENNGHVSLEQRQSPLIGDYQEAQTNNNRSVCKGKDIIEVSGTVGNMSEIRTAENSEVVRRCWIGPMANPSPECSVLERLIKALVYIRDYNRDKDMLLQLWVPVNREGGRILITRDFPFSLESTSPNLAKYREISTKFHFPAEGYSGGLLPGLPGRVFKEKVPEWTPDVQLFRSDEYPRVDHAQEYDVRGSLAIPVFEKCSNTCLGVIEVVMTSQKIMYFPELDSVCKALQAVDLRSKNISSIQNVKECNNSYEAALPEIQEVLRSACETHKLPLAQAWVPCIKQGKEGCRHTDDNYIHCISPVEHACYVGDPSVQVFHEACSEHHLLKGQGVTGEAFTTNQSCFSTDVTSYSKTDYPLSHHARIFGLRAAVALRLRSIHNSTDDFVLEFFLPVTCTDCEEQKKMLTSLSMIIQRVCHSLRVISNKELEEEASLSMDEVTVPAESRSARMEFQQCRNITSHGTKEKSNETLTRQVSNLSQQEDTILKENLDYGWECSSFGEGGLPIAGLSKTGDKRRTKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASSAFQIDSFYSKFPELASPNLPGSSLFSTSKQSDLPNPSTTRADTGLLSPEAPSSSCNQSSSSSHSSSNMSEFQLHAQNIAGGKIPGVGEDSADGVMKRVPSELGLKSLSQDTAELLPTSQSQETPCVHPKTVLKSSHIAHPKEDTHRVKVTFREEKTRFRMPKSWHYEELLWEIAWRFNIDDMRKFDIKYLDDDSDWVLLTCDADLEECIDVCQHSQSSTIKLFLQDSKS 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0209 880 Gene3D - 791 876 - -
Mibi10g0209 880 SMART PB1_new 795 878 IPR000270 GO:0005515
Mibi10g0209 880 Pfam PB1 domain 795 877 IPR000270 GO:0005515
Mibi10g0209 880 PANTHER PROTEIN NLP8 105 877 IPR045012 GO:0003700
Mibi10g0209 880 SUPERFAMILY CAD & PB1 domains 786 878 - -
Mibi10g0209 880 ProSiteProfiles RWP-RK domain profile. 571 652 IPR003035 -
Mibi10g0209 880 Pfam RWP-RK domain 584 632 IPR003035 -
Mibi10g0209 880 ProSiteProfiles PB1 domain profile. 795 878 IPR000270 GO:0005515
Mibi10g0209 880 CDD PB1_NLP 796 877 IPR034891 -
Mibi10g0209 880 MobiDBLite consensus disorder prediction 673 720 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0209 Mibi-ChrMibi10 3507837 3511280 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g0209 16 878 NLP Transcription Factor Family AT1G20640 48.450 0.0 726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Mibi10g0209 PB1 1.9e-21 CL0072