Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0108 ATGCCGTCGAACTCCGGCGACAATCCCCGACCACCGTCGTCGAAGCCACAAGCTCCGCCGCCAGAACAAGAGCACCTCCCATGTCCACGATGTGACTCCACCAACACCAAGTTCTGCTACTACAACAACTATAACTTCTCTCAGCCCCGCCACTTCTGCAAATCCTGCCGCCGTTACTGGACCCACGGCGGCACCCTCCGTGACATCCCCGTCGGCGGCGGCAGCCGCAAAAACGCCAAACGCTCCCGCACCTCCGCCGTCTCCTCCGCCGCCACCCCCACCTCCTCCGTCCAAGACCACCCCCTTCCGGCCACCCCAGTTTTCCTACCGGCCGTCGTCGCCGGAGGCGCCCAAGGTGGGTCCCTCCAGTTCAACGGTGGGGTTGTTGATGGTGAGATGAAGACTAGTATGGGCATGTGTGGGAGTTTTACTTCTTTGCTTAACAATACTGCTAGTAGCCAAGGGAATGGTTTCTTGGCTTTGGGTGGGTTTGGGCTTGGGCTGGGCCATGGCTTTGATGATATTGGGTTTGGTAATGGGAGAGGAGGGTGGGCTTTTCCTGGGATGGTGGATGGCGGAGGCGGCGGCGGCGTTAACGGCGGTGTTGGGGCTTCCGGCGTTGGGAACTCATGGCAGCTTGACGGCGGCGATGGTGGCTTTGTTGGTGGTGGTGCTGCTGACTGTTTCTCTTGGCCTGGACTTGCTATCTCAACACCTGGGAATGGCCTGAAATGA 735 0.5973 MPSNSGDNPRPPSSKPQAPPPEQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTSAVSSAATPTSSVQDHPLPATPVFLPAVVAGGAQGGSLQFNGGVVDGEMKTSMGMCGSFTSLLNNTASSQGNGFLALGGFGLGLGHGFDDIGFGNGRGGWAFPGMVDGGGGGGVNGGVGASGVGNSWQLDGGDGGFVGGGAADCFSWPGLAISTPGNGLK 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0108 244 ProSitePatterns Zinc finger Dof-type signature. 28 64 IPR003851 GO:0003677|GO:0006355
Mibi10g0108 244 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 106 IPR045174 GO:0003700|GO:0006355
Mibi10g0108 244 MobiDBLite consensus disorder prediction 1 28 - -
Mibi10g0108 244 ProSiteProfiles Zinc finger Dof-type profile. 26 80 IPR003851 GO:0003677|GO:0006355
Mibi10g0108 244 MobiDBLite consensus disorder prediction 78 101 - -
Mibi10g0108 244 MobiDBLite consensus disorder prediction 67 102 - -
Mibi10g0108 244 Pfam Dof domain, zinc finger 24 80 IPR003851 GO:0003677|GO:0006355
Mibi10g0108 244 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0108 Mibi-ChrMibi10 1749765 1750499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g0108 1 244 C2C2-Dof Transcription Factor Family AT3G50410 47.710 3.47e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mibi10g0108 zf-Dof 3.3e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi10g0108 10 1749765 1750499 Mibi10g0108 10 1749765 1750499 ECH