Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0083 ATGGCGAATGGGTTTGGGGAATCGACGAGCACGTCTTCTCAAACCCCATCTTGCTCAGGGAATGGTCCAAATGATGCAGGCGATTTTGAATGTAACATATGTTTCGATTTAGCACAGGACCCAGTTATCACTCTCTGTGGTCATTTATTTTGTTGGCCATGTCTCTACCGATGGCTCCACCATCACTCACATTCTCAAGAATGTCCAGTTTGTAAGGCTCTTGTGCAGGAAGAAAAACTTGTTCCATTGTATGGAAGGGGTAAGACACAGAGTGACCCAAGAAGAAAGTCATATCCTGGTATGGAGATTCCTCGCCGCCCTGCAGGACAGAGGCCTGAAGCAGCACCTGCACCACCAGAAGCCAATAATCCATTTGGGAATTATGGGTTTGGATTGATGGGAGGGTTTATACCAATGGCAACAGCTAGGATGGGGAATTTCACCTTTTCTACGGCTTTTGGTGGCTTTATCCCATCGCTTCTTAATATTCAATTCCATGGTTTTCAAGATGCCTCTGTTTATGGAACAACCTCTGGTTATCCCTTTGGATTTAATGGCTTTCATGGAGGACATACACGCGATTTCGCCCGCCCAACTGATCAGGGGAATCGGCATGAGGATAATGTTTTGAAGAATATCTTTTTGTTGGTTGGTCTACTTGTCCTCCTTGCTTTGATTTTTGGGTAG 687 0.4527 MANGFGESTSTSSQTPSCSGNGPNDAGDFECNICFDLAQDPVITLCGHLFCWPCLYRWLHHHSHSQECPVCKALVQEEKLVPLYGRGKTQSDPRRKSYPGMEIPRRPAGQRPEAAPAPPEANNPFGNYGFGLMGGFIPMATARMGNFTFSTAFGGFIPSLLNIQFHGFQDASVYGTTSGYPFGFNGFHGGHTRDFARPTDQGNRHEDNVLKNIFLLVGLLVLLALIFG 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0083 228 CDD RING-HC_AtRMA_like 29 73 - -
Mibi10g0083 228 Pfam Zinc finger, C3HC4 type (RING finger) 30 71 - -
Mibi10g0083 228 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Mibi10g0083 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 93 IPR013083 -
Mibi10g0083 228 MobiDBLite consensus disorder prediction 1 21 - -
Mibi10g0083 228 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Mibi10g0083 228 SUPERFAMILY RING/U-box 27 84 - -
Mibi10g0083 228 MobiDBLite consensus disorder prediction 85 120 - -
Mibi10g0083 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 223 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mibi10g0083 228 SMART ring_2 31 71 IPR001841 -
Mibi10g0083 228 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 14 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0083 Mibi-ChrMibi10 1372921 1373607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g0083 21 227 C3H Transcription Factor Family AT2G23780 64.319 2.69e-90 263