Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0065 ATGTCTTCCTCATCCCCTGAAACTGCTCCAACCTTCGATCCTGGTAACAACAACAACGATAATAATGATGATTATGGAGATTCATCACCAAGCCCTCCATCACCCCCACCACCAGATCAGCAATCCGGAGATACTAATAATGATCCGTTAATTGTGAGTTCACCACCATCACCTGACCAGAACTCTTCCAATTCCAATAGCTCAGATTCTGGTTCTTCTGGTACCAAATCGCCATCTCCAACTTCAACTCCTTCACCCAACAACGGTAAATCATCGTCAAGCATTGGTTTATCTCCGTCAACTACGCCTGAATTAACACCAAAATCTTCCGGCGAAAAAAAGCATTCGCCTAGTGCATTATCCGATTCCAATGGAAAAAGCGGCAAGAGTGACGACGATGGTAGAGGCATCATTGGAGCCACCGTTGGTGTAGGGTTTTTTCTTCTTATGATGCTTGGCATCTGCTTCTTTTGTTGTAGAAGGAGGAGGCGAAAGCCTAGGTATTACTATGGCGATAATGGCAAAAACAACAACAACGGAAGTGGTTATTACAACAGAGGACAGAACCCAAATAATTGGCACCCTAGTGGGAATGACCATATTGTGAGGATGCAGCAATCACAAGGCATGGACAGTGGTGGGTGGGGCCCACCTCCACAACCACACAGCGCTGACATGAGTTCAAATTACTCACAGAGGAGCCCACCATCGATCCATCCGTCGTCGTCGCCAAGGCTATCCTTAGGGATGAATTGTGGAGCCTTCTCTTTTGAAGACTTAGCTGCAGCAACAGAGGGATTTGCTGATAAGAATCTGATAGGACAAGGAGGTTTTGGGTATGTGCATAAGGGTGTTTTGCCTAATGGAAAAGAAGTTGCTGTTAAGAGCCTGAAAGCTGGTAGTGGCCAAGGAGAACGTGAGTTCCAAGCCGAGATTGAAATCATTAGTCGTGTTCATCATCGCCATCTCGTGACTCTTTTGGGTTACTGTATTTCTGGTGGACAACGAATGTTGGTTTATGAGTTTGTTCCCAATAACACTCTGGAGCATCACCTTCATGCGAAGGGTTTGCCTACCATGACTTGGGCTGCTAGAATGAGAATTGCAGTAGGATCTGCCAAAGGGCTTGCATACCTTCATGAAGACTGTCATCCTCGAATTATACATCGTGATATCAAATCTGCTAATGTCCTTCTTGATGATAGCTTTGAAGCTAAGGTGGCTGATTTTGGATTAGCGAAGTTGACTACTGATACTAATACTCATGTCTCAACTCGAGTCATGGGAACATTTGGGTACTTGGCTCCTGAATACGCTTCAAGTGGAAAATTGACAGAGAAGTCAGACGTGTTCTCTTTTGGAGTGATGTTATTAGAGATTATAACAGGGAAGCGACCTGTTGATATCCAAAATATGATGGACGATAGTTTAGTAGACTGGGCTCGACCACTCCTAGCGAGAGGGCTTGAGGATGGCAACTTTGAAGAATTGGTGGATCCGTTCTTGGAAGGCAACTACAATAACCAAGAATTATCTCGCATTGCTGCTTGTGCTTCTGCTAGCATTCGCCATTCTGGAAAGAAACGTCCTAAAATGAGCCAGATTGTAAGAGCATTGGAAGGAGATGTTTCACTGGAAGACTTGAGCGAAACAAAGGCAGGGCATGGCCACCTGATGGGATCTTCATCGGGCTCATCAGAGTACGATTCAAGTGCATATCAGGCCGATATGAAAAGGTTCAGACAAATAGCTTTGGCAAGTCAGGAATTCGGAAGCAGTGAATCAAGTGGTGAAATGTCTCAAGGTCATGGCCAGGTTCCAAAGCATTAA 1830 0.4503 MSSSSPETAPTFDPGNNNNDNNDDYGDSSPSPPSPPPPDQQSGDTNNDPLIVSSPPSPDQNSSNSNSSDSGSSGTKSPSPTSTPSPNNGKSSSSIGLSPSTTPELTPKSSGEKKHSPSALSDSNGKSGKSDDDGRGIIGATVGVGFFLLMMLGICFFCCRRRRRKPRYYYGDNGKNNNNGSGYYNRGQNPNNWHPSGNDHIVRMQQSQGMDSGGWGPPPQPHSADMSSNYSQRSPPSIHPSSSPRLSLGMNCGAFSFEDLAAATEGFADKNLIGQGGFGYVHKGVLPNGKEVAVKSLKAGSGQGEREFQAEIEIISRVHHRHLVTLLGYCISGGQRMLVYEFVPNNTLEHHLHAKGLPTMTWAARMRIAVGSAKGLAYLHEDCHPRIIHRDIKSANVLLDDSFEAKVADFGLAKLTTDTNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLEIITGKRPVDIQNMMDDSLVDWARPLLARGLEDGNFEELVDPFLEGNYNNQELSRIAACASASIRHSGKKRPKMSQIVRALEGDVSLEDLSETKAGHGHLMGSSSGSSEYDSSAYQADMKRFRQIALASQEFGSSESSGEMSQGHGQVPKH 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0065 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 387 399 IPR008271 GO:0004672|GO:0006468
Mibi10g0065 609 MobiDBLite consensus disorder prediction 586 609 - -
Mibi10g0065 609 MobiDBLite consensus disorder prediction 43 125 - -
Mibi10g0065 609 MobiDBLite consensus disorder prediction 1 28 - -
Mibi10g0065 609 MobiDBLite consensus disorder prediction 222 244 - -
Mibi10g0065 609 FunFam proline-rich receptor-like protein kinase PERK1 245 342 - -
Mibi10g0065 609 MobiDBLite consensus disorder prediction 172 213 - -
Mibi10g0065 609 FunFam Proline-rich receptor-like protein kinase PERK1 343 550 - -
Mibi10g0065 609 SUPERFAMILY Protein kinase-like (PK-like) 244 539 IPR011009 -
Mibi10g0065 609 ProSitePatterns Protein kinases ATP-binding region signature. 273 295 IPR017441 GO:0005524
Mibi10g0065 609 MobiDBLite consensus disorder prediction 586 602 - -
Mibi10g0065 609 Gene3D Phosphorylase Kinase; domain 1 237 342 - -
Mibi10g0065 609 SMART serkin_6 267 502 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi10g0065 609 ProSiteProfiles Protein kinase domain profile. 267 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi10g0065 609 Gene3D Transferase(Phosphotransferase) domain 1 343 554 - -
Mibi10g0065 609 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 143 584 - -
Mibi10g0065 609 Pfam Protein tyrosine and serine/threonine kinase 271 536 IPR001245 GO:0004672|GO:0006468
Mibi10g0065 609 MobiDBLite consensus disorder prediction 1 135 - -
Mibi10g0065 609 MobiDBLite consensus disorder prediction 168 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0065 Mibi-ChrMibi10 1049672 1053647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g0065 134 600 Trihelix Transcription Factor Family AT1G70460 49.796 2.72e-151 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Mibi10g0065 PK_Tyr_Ser-Thr 2.3e-47 CL0016