Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0054 ATGTCTGGTTACGAGGGGCACGTGATGGGGGCGTGCGCATGTGGGATGTATCACAGCCAAGCAAATTCCTTCCCAGTGTTATACAACAACCACCAAAATTCCTATTCCTACAACAATGACTACGATGATTCTGACATGTATTCTTCCTTCACTCCCTCATCATCTTCCTCAGTTGACTGTACCCTCTCTCTGGGCACCCCCTCCACCCGTTTGACCCACGACGATGACCGCCGTGGCGGCGAACGACGTCGTTCTGTGTCCAACATGTGCTGGGATTTGTTACACTCCAATCAATCCCACAGTAGTGGCAGTAAACCCAACAAAGGTGGCTCCTCTTCCTCTAATGATCCTCTTCTCGCTCGTCGATGTGCTAATTGTGACACCACTTCCACTCCCCTTTGGAGAAATGGCCCCAGAGGCCCCAAGTCACTGTGCAATGCCTGTGGGATAAGATACAAGAAGGAAGAGAGGAGAGCCAATGCGGCGGCGGCGGCGGCGTCTGGCGGGGTGATGGAGTCTCAGGGGATGTACGGACAGCAGGACAATTACTGGTACTCGCAGGGGCAGAGAATGGCGCGTTACTCTCCGGGAATGGTGGAAGATAGCAATGCAGATTCCGACAATGGCATGTCTTTCCTCTCTTGGAGGCTCAATGTAACAGACAGACCAAGCCTCGTCCATGACTTTACCAGATAA 696 0.5259 MSGYEGHVMGACACGMYHSQANSFPVLYNNHQNSYSYNNDYDDSDMYSSFTPSSSSSVDCTLSLGTPSTRLTHDDDRRGGERRRSVSNMCWDLLHSNQSHSSGSKPNKGGSSSSNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRANAAAAAASGGVMESQGMYGQQDNYWYSQGQRMARYSPGMVEDSNADSDNGMSFLSWRLNVTDRPSLVHDFTR 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0054 231 Pfam GATA zinc finger 123 157 IPR000679 GO:0006355|GO:0043565
Mibi10g0054 231 PANTHER GATA TRANSCRIPTION FACTOR 18 8 231 IPR044272 GO:0003700|GO:0009908
Mibi10g0054 231 Gene3D - 119 190 IPR013088 GO:0006355|GO:0008270
Mibi10g0054 231 MobiDBLite consensus disorder prediction 97 117 - -
Mibi10g0054 231 MobiDBLite consensus disorder prediction 53 69 - -
Mibi10g0054 231 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 120 159 - -
Mibi10g0054 231 CDD ZnF_GATA 122 154 IPR000679 GO:0006355|GO:0043565
Mibi10g0054 231 SMART GATA_3 117 169 IPR000679 GO:0006355|GO:0043565
Mibi10g0054 231 MobiDBLite consensus disorder prediction 53 83 - -
Mibi10g0054 231 ProSitePatterns GATA-type zinc finger domain. 123 148 IPR000679 GO:0006355|GO:0043565
Mibi10g0054 231 ProSiteProfiles GATA-type zinc finger domain profile. 117 153 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0054 Mibi-ChrMibi10 910453 911452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g0054 13 231 C2C2-Gata Transcription Factor Family AT3G50870 40.845 7.72e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mibi10g0054 GATA 6.3e-18 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1979 12 36081298 36082136 Mibi10g0054 10 910453 911452 CCT
Mibi10g0054 10 910453 911452 Mibi10g0054 10 910453 911452 ECH