Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0050 ATGGGATCTGATCGTGGTGAAGTAGTGGAGACGGTACCAAATATCCGCTCCTTTAAGGTCCATCGTAAAATGTGCACAGAGCTAATGAAATTAGTTGATAGAATCTCTAGGATATTCCCAGATATTGAGGCAGCACGTCCTCGATGTTCATCAGGGATACAGTCTCTGTGCTTGCTAAACAATGCAGTTGATAAAGCCAAACTTCTTCTGCAGCATTGCTGCGAATCTAGCAAACTCTACCTGGCTGTCACGGGAGATACAGTACTCTCAAGATTCCAAAAAGCAAGAAAATCATTGGAGCAAAGCTTAGGCCAAGTTCAGAGCATAGTTCCAGTTATGTTGGCTGCAGAGATTTCTCAAATAATTGACAATCTTGCATGCATGACCATTGGATTAGATTCAGCTGAAGAAGAGGCTGGGAGGGTTTTAAAGGAATTACTTCAGCAAGGTGCTTCAACTTCAGACTCAACTGAAAATTCTGAAATTAAAGCTCTTCTGTTTGCTGCAGCAAGACTTAATATTACATCCCCAAAGGCCATCTTAATTGAGAAACGATCTATTAAGAAATTGGTAGATAAAGTTGGACCAAATGATCAGACGAAAAAGATGATCTTGAGATATCTCTTGTATCTGTTGAAGAAGTATGGTAACAATATCTCAGGAGAGCAGATGGAAATGATCTATCCTTATAGTGAAGGACCTATTGCACATGAGAACTGCAGTCATCATTATGTTGATCCAGAAAGATGCTTTAATTATAATCAATTTGAAACTCACAACAGTGAGATGGGTAGAGTAGAACCGCCAGAGGAATACAAATGTCCAATATCTTCAAGGCTAATGTATGATCCTGTTGTTATTGCTTCAGGAGCAACATATGAAAGAATGTGGATACAAAAGTGGTTTGACGAGGGCAATGATACATGTCCAAAAACCAAGAAGAAACTGTCCCATATGTCATTGACTCCAAACACTGTTATGAAGGACTTAATATCCAAGTGGTGCAGAAATAATGGAGTTTCACTTGCTGAACCACAACAGCAAGCAAAAGCATTTCACTCATGGGAGGTTTCTTCAACTTCCATTAGGAGCTTTGGCAGTTCTATGAATGAGCTGCATTTGCCTGTAGATCTTAGCAGCATGTCACTTGGGTCATTAGATTATAGTCACGGTTCTGATTCTTCACATGTTAGGAACACCAATGACTTGAATTTGATGTTAAAGAAGGCCAATGACAATTCTTTGAGTCAACAACTTAATGTGCATGTGCATGACACCGATCTGACAATTTTGTCTAAATTCCATGAACTTGAATGGGAATCTCAATGCCAGGCCATTAAAGATCTGAAAGATCGTTTGAATTGCAATTGCGAAGCTTCTTGTTCTGTGTCTTCTGAAAATTTTGTTGAAGTTCTTAACAAATTTTTGAGCAGTGCATATGAACATCAAGATGTAAAAGCTCTGAGAACAGGAACTCAATTGTTAATGGAACTTGTGAATTACTGCGGAAAGGATCTATCTTATTTAAGAGAAGATACATTCAGCATGTTGGGAGGTTTCCTTGATGTAGAAGTCATAGGTGAAGTTCTTTCTATAATGGAAAAAATATCTGCACATCATCACAACAAAGCTACAGTTGCAACATCCAGTGTGTTCACTTCCATTTTAAAGATCCTGGACTCTGACAGCAGAGATTTCCAAGAACAAGCTATAAGAATACTGTATAATCTGTCTTTCAACAGTGAGAATTGCTCCCACATGGCATCTCTCGGGTGCATACAAAAATTGATTCCCTTTTTTGAGGACCAGGCCCTTTTACTATACTGTGTATGCATGCTGAAAAACCTTTGTGATATTGAGGTGGGGAGGGTTTCTGTTGTGGGAACTTATGGGTGCATAGCTAAAGTTGCTGAGATACTTGACACTGGCAGTGTTGAGGAGCAGGAGCATGCACTTTCTATTTTACTCTCTTTATGCTCTCAACGCGAAGATTATTGTCAGATGGTCATGTATGAGGGTGTTATACCTTCTCTTGTCTCAATCTCCATCAATGGAAGTGACAATGGAAAGGTGAGTGCATTGGAATTGCTCCGTCTCCTGGGGGATGTTGAATATGATGAAGAGTCCATGAAACCCAGATGTGACACTCAAGACTCTAACAATCAGTCCCAAGGAAAGAAATCTTCAAAGACCCCTGGATTTCTGAAGAAACTATCACCATTCTCAAAAGGCAAGAGATGA 2241 0.3958 MGSDRGEVVETVPNIRSFKVHRKMCTELMKLVDRISRIFPDIEAARPRCSSGIQSLCLLNNAVDKAKLLLQHCCESSKLYLAVTGDTVLSRFQKARKSLEQSLGQVQSIVPVMLAAEISQIIDNLACMTIGLDSAEEEAGRVLKELLQQGASTSDSTENSEIKALLFAAARLNITSPKAILIEKRSIKKLVDKVGPNDQTKKMILRYLLYLLKKYGNNISGEQMEMIYPYSEGPIAHENCSHHYVDPERCFNYNQFETHNSEMGRVEPPEEYKCPISSRLMYDPVVIASGATYERMWIQKWFDEGNDTCPKTKKKLSHMSLTPNTVMKDLISKWCRNNGVSLAEPQQQAKAFHSWEVSSTSIRSFGSSMNELHLPVDLSSMSLGSLDYSHGSDSSHVRNTNDLNLMLKKANDNSLSQQLNVHVHDTDLTILSKFHELEWESQCQAIKDLKDRLNCNCEASCSVSSENFVEVLNKFLSSAYEHQDVKALRTGTQLLMELVNYCGKDLSYLREDTFSMLGGFLDVEVIGEVLSIMEKISAHHHNKATVATSSVFTSILKILDSDSRDFQEQAIRILYNLSFNSENCSHMASLGCIQKLIPFFEDQALLLYCVCMLKNLCDIEVGRVSVVGTYGCIAKVAEILDTGSVEEQEHALSILLSLCSQREDYCQMVMYEGVIPSLVSISINGSDNGKVSALELLRLLGDVEYDEESMKPRCDTQDSNNQSQGKKSSKTPGFLKKLSPFSKGKR 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0050 746 Pfam U-box domain 269 338 IPR003613 GO:0004842|GO:0016567
Mibi10g0050 746 PANTHER U BOX DOMAIN-CONTAINING 23 709 - -
Mibi10g0050 746 MobiDBLite consensus disorder prediction 708 746 - -
Mibi10g0050 746 FunFam RING-type E3 ubiquitin transferase 267 341 - -
Mibi10g0050 746 ProSiteProfiles U-box domain profile. 267 341 IPR003613 GO:0004842|GO:0016567
Mibi10g0050 746 MobiDBLite consensus disorder prediction 715 730 - -
Mibi10g0050 746 SMART Ubox_2 271 334 IPR003613 GO:0004842|GO:0016567
Mibi10g0050 746 SUPERFAMILY ARM repeat 522 708 IPR016024 -
Mibi10g0050 746 Pfam Kinesin-associated protein (KAP) 465 649 - -
Mibi10g0050 746 Gene3D - 431 728 IPR011989 -
Mibi10g0050 746 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 342 IPR013083 -
Mibi10g0050 746 CDD RING-Ubox_PUB 272 314 IPR045210 -
Mibi10g0050 746 SUPERFAMILY RING/U-box 257 342 - -
Mibi10g0050 746 SMART arm_5 539 579 IPR000225 GO:0005515
Mibi10g0050 746 SMART arm_5 580 618 IPR000225 GO:0005515
Mibi10g0050 746 SMART arm_5 662 702 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0050 Mibi-ChrMibi10 832532 836052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g0050 5 708 U-box Gene Family AT4G36550 38.483 1.29e-142 434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi12g1990 12 36180071 36183249 Mibi10g0050 10 832532 836052 CCT
Mibi10g0050 10 832532 836052 Mibi10g0050 10 832532 836052 ECH
Mibi10g0050 10 832532 836052 Mibi12g1990 12 36180071 36183249 ECH