Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0048 ATGACGTGCTGGGAATTGGCTAACCCACTAAAGATATGGTTTCAATGGATTGAACCTGCTGCTAAGTCTGCGTTCAGTGTATCTCTGTTTTGCTTACCATTTGTATTTCTTATTATAATAGAGCAAAAGCTATGTCCTCAATCCCAGAATAGAGAAGTATTCCATTTCTGTTTCTGTTGGTGCAGTTTTGTGTTGGAAGGGAAATTGATATGCTGCGCAAACATGCCATTGAAAAGCATTGTTCGTGAACTTAAGGAAATGAGAGGTGGAATGAGCAACATGTCGATGCGAGGTGCAGAATGTAAGCAATGGCACAGTCGAAAAGCAAAATCTCATATTGCTCCAGATGTCACCTTGCCTCCAGTTGATTCTATTCAACAAGGACGGTGGGCAAATCTACCTCCAGAACTGCTTTTGGACATCATTCAGAGGGTGGAAGAGAGTGTGACATCATGGCCTGCAAGGGCTGTCATTGTTTCCTGTGCTTCAGTATGTAAATCGTGGAGAGCCATTACAAAGGAAATCATCAAGACTCCTGAGCAATGTGGGAGGCTCACATTTCCTGTCTCAGTGAAGCAGCCCGGTCCTCGTGATGCGCCAATACACTGCTTTATCAGGAGGAACAGAGAAACTTCTACGTACTTCTTGTATTTTGGTCTTGTTCCATCGGAAAATGAGAGAGCCAAGTTGTTATTAGCTGCAAGAAAGACAAGAAACCCAATAGCCACAGAGTTTGCTATATCTTTCATTGCAGATGATTTTTCTCGGGCCAGCAGCACATATCTTGGTAAATTGAGGTCCAATTTTTTGGGAACCAAGTTTGCCATATATGATAGCCAACCTCCACAGAGAACTTGCATTCAAGCGAATAATCGCTCTAGTAGTAAATTCCACTCAAAGCAGATATCTCCCAATGTACCATCATGTAAATATAATGCTGCCAGCATCAGTTATGAACTCAACATTCTTCGCACGAGAGGTCCAAGAAGAATGCACTGCATTTTGAACTCCATACCTATGTTGGCTATTCAAGAAGGAGGCAATGCCCCAACGCCAACTACTCTTCCGCAATTTTCTTCCTCACAAGCCCTGAAAGGGAAAGATTCAATTGCAGATTTAAACCCTTCAAACTTACTAGATCCACCAACATCAAGTCAGGGCCCAGTTGAGCCTCTTGTTCTTAAAAACAAGTCTCCCAGATGGCATGAGCAACTGCAGTGCTGGTGCCTAAATTTCAAGGGCCGTGTCACGGTTGCTTCTGTGAAGAATTTCCAGCTTTGTGCTGCTGTTGATCCGTCTCATGATGTTCCTGCTGCAGAACTAGAGAAGGTGATCTTGCAGTTTGGGAAGATTGGTAAAGACATATTCACCATGGACTACCGATATCCTCTCTCAGCTTTTCAAGCTTTTGCCATATGCTTGAGCAGTTTCGATACTAAACCGGCTTGTGAATGA 1455 0.433 MTCWELANPLKIWFQWIEPAAKSAFSVSLFCLPFVFLIIIEQKLCPQSQNREVFHFCFCWCSFVLEGKLICCANMPLKSIVRELKEMRGGMSNMSMRGAECKQWHSRKAKSHIAPDVTLPPVDSIQQGRWANLPPELLLDIIQRVEESVTSWPARAVIVSCASVCKSWRAITKEIIKTPEQCGRLTFPVSVKQPGPRDAPIHCFIRRNRETSTYFLYFGLVPSENERAKLLLAARKTRNPIATEFAISFIADDFSRASSTYLGKLRSNFLGTKFAIYDSQPPQRTCIQANNRSSSKFHSKQISPNVPSCKYNAASISYELNILRTRGPRRMHCILNSIPMLAIQEGGNAPTPTTLPQFSSSQALKGKDSIADLNPSNLLDPPTSSQGPVEPLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLCAAVDPSHDVPAAELEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0048 484 Pfam F-box domain 130 175 IPR001810 GO:0005515
Mibi10g0048 484 ProSitePatterns Tub family signature 2. 469 484 IPR018066 -
Mibi10g0048 484 PRINTS Tubby superfamily signature 261 285 IPR000007 -
Mibi10g0048 484 PRINTS Tubby superfamily signature 310 337 IPR000007 -
Mibi10g0048 484 PRINTS Tubby superfamily signature 394 411 IPR000007 -
Mibi10g0048 484 PRINTS Tubby superfamily signature 412 428 IPR000007 -
Mibi10g0048 484 PRINTS Tubby superfamily signature 245 261 IPR000007 -
Mibi10g0048 484 PRINTS Tubby superfamily signature 462 484 IPR000007 -
Mibi10g0048 484 PRINTS Tubby superfamily signature 441 460 IPR000007 -
Mibi10g0048 484 Gene3D - 123 177 - -
Mibi10g0048 484 Pfam Tub family 191 479 IPR000007 -
Mibi10g0048 484 SUPERFAMILY F-box domain 126 173 IPR036047 GO:0005515
Mibi10g0048 484 ProSitePatterns Tub family signature 1. 412 425 IPR018066 -
Mibi10g0048 484 Gene3D Tubby Protein; Chain A 187 484 IPR025659 -
Mibi10g0048 484 PANTHER TUBBY-RELATED 96 482 - -
Mibi10g0048 484 SUPERFAMILY Tubby C-terminal domain-like 179 484 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0048 Mibi-ChrMibi10 822784 825223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g0048 75 484 TUB Transcription Factor Family AT2G18280 60.095 7.86e-176 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Mibi10g0048 Tub 4.8e-101 CL0395