Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0021 ATGGCCCATTTTTTCTCACTAGGCGGAGGAGCAGGAGGAAGCAGCAGCAGCAGCAGGAGGCAGCAGCAGGATCAAAACCCAACAACGGAATTCCCGGCACAGGAGACGATATACTGGTACAAGAACGAGGATGCGCCACCGTCGTACAGGGGATTCGAGCTGTGGCAGCAGGAGGAGCATTTCATGGATGTGTACGGCGGCGGGGACAGCTCGCCGGCAGATTTCAGATGCGTGCGGGTGAACTCAATGGACGAGGCGGAGGAACAGTTGGCATACCAAACGGCAGTGAACATAGGAGGGCATGTCTTCAAGGGAATTCTGTACGACCAAGGTCCCGACTTTAACTACACGCCTCCTCCAGATCATTCCAGCGTCGGCGGAGTCATCGCCGGCGCTCCTGTTTTACCCTCCTCCTCAATAAGTGGTGGTGCCATGGCTTCGCCTGGTGGGGATCCTTCTTCTTTCTATGCCACTTCACTTAATAACCCTTTCATGCCTGGAGGTAGTGGTACGCAATTCTTCCCTCCCTCAACATCTTCATGA 543 0.5488 MAHFFSLGGGAGGSSSSSRRQQQDQNPTTEFPAQETIYWYKNEDAPPSYRGFELWQQEEHFMDVYGGGDSSPADFRCVRVNSMDEAEEQLAYQTAVNIGGHVFKGILYDQGPDFNYTPPPDHSSVGGVIAGAPVLPSSSISGGAMASPGGDPSSFYATSLNNPFMPGGSGTQFFPPSTSS 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0021 180 MobiDBLite consensus disorder prediction 142 161 - -
Mibi10g0021 180 Pfam Domain of unknown function (DUF702) 63 113 - -
Mibi10g0021 180 MobiDBLite consensus disorder prediction 1 36 - -
Mibi10g0021 180 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 70 161 IPR007818 GO:0003700|GO:0006355
Mibi10g0021 180 MobiDBLite consensus disorder prediction 10 35 - -
Mibi10g0021 180 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 70 112 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0021 Mibi-ChrMibi10 455926 457161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g0021 70 176 C2H2 Transcription Factor Family AT1G75520 43.119 1.74e-18 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Mibi10g0021 DUF702 1.6e-20 No_clan