Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0018 ATGGGTCGGGGAAAGATTGAGATCAAGTTGATCGAGAATGCCACCAACAGGCAGGTCACCTACTCCAAACGGCGAAATGGTATTTTCAAGAAAGCCCATGAACTCAGTGTTCTCTGCGATGCTAAGGTCTCCCTCATCATGTTCTCCAAAAACAATAAGATGCATGAATACACCACTCCTGGCTTTACGACAAAGAATATAATAGATGAGTACGAGAGGAATTTGGGGAATATCGATCTCTGGAATGCCCAATACGAGAGGATGCTCGAAACTATGAAGAAGCTGAAAGATCTTAACAATAAACTCAGAAGACAGATAAGGCAGAGGATGGGTGAGGATTTAAACGATCTGAACTTCCAGCAACTACGCGTTCTTGAGGAGGATATGGTGTCTGCCTCAGCGATCATACGTGAACGAAAGCTTCATGTGATCAAAACCCGGACTAGCACCAGTAAGAAGAAGGTCAAAAGCATTGAGCAGATGAACGAGAATATGTTGCTTGAACTTGAAAAATGTGTGATCCATTCGCAATATCTGGTGCACGAGGAAGGAGATCAGGAATCTGCAGTTACAGTGGCCACCGGTGTCTCCAATTTCCATGGATTGTGCCACCAGCAGCACCCAACACATATGAATCTTCACCATAATGGGATGGGATTGAGATCAGACGATCTGCGCTTAGCTTGA 687 0.4469 MGRGKIEIKLIENATNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYTTPGFTTKNIIDEYERNLGNIDLWNAQYERMLETMKKLKDLNNKLRRQIRQRMGEDLNDLNFQQLRVLEEDMVSASAIIRERKLHVIKTRTSTSKKKVKSIEQMNENMLLELEKCVIHSQYLVHEEGDQESAVTVATGVSNFHGLCHQQHPTHMNLHHNGMGLRSDDLRLA 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0018 228 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mibi10g0018 228 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977|GO:0045944
Mibi10g0018 228 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mibi10g0018 228 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mibi10g0018 228 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Mibi10g0018 228 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mibi10g0018 228 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mibi10g0018 228 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mibi10g0018 228 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Mibi10g0018 228 Coils Coil 78 112 - -
Mibi10g0018 228 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mibi10g0018 228 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Mibi10g0018 228 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 187 - -
Mibi10g0018 228 Pfam K-box region 83 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0018 Mibi-ChrMibi10 387099 388522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g0018 1 210 MADS-box Gene Family AT3G54340 49.537 6.37e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mibi10g0018 K-box 1.5e-15 No_clan