Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi10g0006 ATGGACATTCTCATTCAGACGAAAGAGGCCAGGTATGCCGTGAAAATTCTTGACAAAGGGACAAGCGAGTCAGAGCCCCACTATTCAAACCTCTTCTTACTTTCTCTCTCTTGTACTCCTTCCCATGCCTTGTTCCCATACAAGCCTTTTCCCTTTCGAGAGGCGCTAGCAGTTATTGCTGTGATGGAGTTGATGGAGTCACGTGTTCCACCTGGCTTTCGTTTCCACCCAACCGATGAAGAGCTTGTTGGCTATTATCTGAAGAAGAAAGTTGCTTCTCAGAATATTGACCTTGATGTTATCAAAGAGATCGATCTATATCGTATAGAGCCGTGGGATCTTCAAGAGAGATGTAGGATAGGGTACGAGGAGCAGAGAGAATGGTATTTCTTCAGCCACAAGGACAAGAAGTATCCGACAGGGACGAGGACGAACAGAGCTACCGTGGCGGGTTTCTGGAAGGCAACAGGAAGAGACAAGGCTGTGTACAACAAGACAAAGCTCGTAGGTATGAGGAAGACCCTCGTTTTCTACAAAGGAAGAGCCCCGAATGGTCAGAAAACTGAATGGATCATGCATGAATATAGGCTCGAATCTGATGAAAACGGACCTCAACAGGAGGAAGGATGGGTTGTATGTAGAGCTTTCAAGAAAAAAAGGAACGGCCTAACGAAGGCGATAGATGGTTGGGATTCAAGCTACTTGTTGGGGGAAGGAAGTGGAGTGAGCACAGTAGTGGATCCAATTGAGTTAATGGCAAGACAGGGTCAGAGTTATAACATAAAACAAAACAATTACATGTGCAAGCAAGAGTTAGAAGTGGACAACTTGAGTACTTTGATTCACTCATCAGACCCATTCATACAGCAGCTTCCTCATCTAGCAAGCCCCTTTCTTGTACTCACTAAGAGGCCCACCTCATCAGACAACAAAAACAACAACCAAGAAGACGACCTAATCACAAACAAAGTGACTACTGATTGGAGGGCTCTTGACAAGTTTGTGGCTTCCCAATTAAGCCAGGAAGACACCTTTGAAACGCCCAATAACACCTCCGACATCTCTTCCTTGCTGTTGTTGCAGAATACTGCCGCTAGAGATGAAGCAGATGAAGGCAACGGGTTAAGCTTAAGCCCGTTTTTTAACACTACAACCTCTTTAGACAATGATATTGGGATATGCGTATTTGACAAATAA 1197 0.4478 MDILIQTKEARYAVKILDKGTSESEPHYSNLFLLSLSCTPSHALFPYKPFPFREALAVIAVMELMESRVPPGFRFHPTDEELVGYYLKKKVASQNIDLDVIKEIDLYRIEPWDLQERCRIGYEEQREWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKAVYNKTKLVGMRKTLVFYKGRAPNGQKTEWIMHEYRLESDENGPQQEEGWVVCRAFKKKRNGLTKAIDGWDSSYLLGEGSGVSTVVDPIELMARQGQSYNIKQNNYMCKQELEVDNLSTLIHSSDPFIQQLPHLASPFLVLTKRPTSSDNKNNNQEDDLITNKVTTDWRALDKFVASQLSQEDTFETPNNTSDISSLLLLQNTAARDEADEGNGLSLSPFFNTTTSLDNDIGICVFDK 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi10g0006 398 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 65 313 - -
Mibi10g0006 398 FunFam NAC domain-containing protein 78 222 - -
Mibi10g0006 398 Pfam No apical meristem (NAM) protein 70 197 IPR003441 GO:0003677|GO:0006355
Mibi10g0006 398 ProSiteProfiles NAC domain profile. 69 218 IPR003441 GO:0003677|GO:0006355
Mibi10g0006 398 Gene3D NAC domain 78 222 IPR036093 GO:0003677|GO:0006355
Mibi10g0006 398 SUPERFAMILY NAC domain 64 218 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi10g0006 Mibi-ChrMibi10 231404 234932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi10g0006 62 397 NAC Transcription Factor Family AT2G18060 58.730 4.07e-136 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mibi10g0006 NAM 1.2e-37 No_clan