Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g2407 ATGCGAACTTCATGGGCAGATTTGGCTGCGAGCTCTGCAGCTGAAAGTGCAGGTCCTGGCTCTTCTGCTAGCAATGTGGGAACTGGTAACTCTTCAGCGCCTACACGCCCAGTCTATGTCCCTCCTCATCTTCGGAACCGTCCACCTTCAGCAGAAGCCCCTGCTCCAGCAAATAGCGGCCGTACTTCTGCTTCTGGTATCGGTGCTGGTGCTGGTGCTGGTAATGTTGGATCCCGTTTGGCTATGCCCCGAAATGAGAATCGGTTTGGGTATGGTGGCAGTAGCCGTGCTGGATGGGGAAACAGGGGCAGTGGCTGGGATCGTGGCAGAGAGAGGGAGGTCAATCCCTTTGGCGATGAGGATAATGCAGAAGAGGAATTTGGTGAGCAGGAGAGTACAGGAATCAATTTTGATGCATATGAAGACATTCCTGTGGAGACCAGTGGTGCGAATGTGCCACCTCCAGTGAATACATTTGCAGAGATTGACTTGGGTGAGGCACTTAATCAGAATATAAGAAGGTGCAAATATGTGAAGCCAACACCAGTTCAACGATATGCCATACCAATATCCCTTACTGGACGAGATTTGATGGCTTGTGCCCAGACTGGTTCCGGAAAGACCGCTGCTTTCTGTTTTCCTATCATTAGTGGAATTATGAGGGGCCAACCTGTGCAGAGGCCACCTCGTGGGGTGCGGACAGTGTATCCACTTGCTCTTGTTCTCTCACCTACTAGGGAGCTATCAATGCAAATACATGAAGAAGCCAGGAAGTTTTCTTACCAAACTGGGGTTAGGGTGGTTGTTGCTTATGGTGGGGCACCAATAAACCAGCAGCTGCGAGATCTTGAGAGAGGAGTTGACATTCTTGTGGCAACTCCTGGAAGATTGGTGGATTTGCTGGAGAGAGCTAGAGTTTCACTGCAGATGATAAGATATTTAGCCTTAGATGAAGCAGACCGGATGCTGGATATGGGCTTTGAGCCTCAAATAAGGAAGATTGTGGAGCAGATGGACATGCCTCCGCCAGGTGCCAGACAGACTATGTTGTTCAGTGCCACATTTCCAAAAGAGATACAGAGATTGGCCTCGGATTTCCTTTCAAATTATATTTTTCTGGCTGTCGGAAGAGTGGGTTCAAGCACAGACTTGATTGTCCAAAGAGTTGAATATGTTCAGGAGTCTGACAAGAGAAGTCACCTCATGGACCTTCTTCATGCTCAGAGGGCAAATGGTGTGCAAGGAAAGCAAGCTTTGACATTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATTCTTTGGAACACTGGCTGTGTATGAATGGTTTTCCAGCCACCACTATTCACGGGGATAGGACACAACAGGAAAGGGAAATGGCATTAAGGTCATTTAAAAGTGGTAACACCCCCATATTGGTTGCCACTGATGTTGCTGCTCGCGGTCTTGATATTCCTCATGTTGCCCATGTGGTCAACTTTGATCTACCAAATGATATTGATGATTATGTACACCGAATTGGGAGGACGGGAAGAGCAGGAAAGAAAGGTCTTGCCACTGCATTCTTCAATGAAAACAACTCATCCCTTGCTAGGGCTTTAGCAGATCTGATGCAAGAAGCTAATCAAGAAGTGCCTGCTTGGCTCTCACGGTATGCTGCTCGATCATCTTTTGGTGGAAGGAACCGTCGATCAGGTGGAGGTCGTTTTGGTGGCCGTGACTTCAGAAGAGAGAGCTTTAACAGCAGAGGTGGTTCTGATTATTATGGTGCAGGAAACAGCAGTGGCGGGTATGGGGCTTCAGGTGGGTATGCTGGAGGATATGGTCCTGGTGTCACAAGTGCGTGGGATTGA 1848 0.4848 MRTSWADLAASSAAESAGPGSSASNVGTGNSSAPTRPVYVPPHLRNRPPSAEAPAPANSGRTSASGIGAGAGAGNVGSRLAMPRNENRFGYGGSSRAGWGNRGSGWDRGREREVNPFGDEDNAEEEFGEQESTGINFDAYEDIPVETSGANVPPPVNTFAEIDLGEALNQNIRRCKYVKPTPVQRYAIPISLTGRDLMACAQTGSGKTAAFCFPIISGIMRGQPVQRPPRGVRTVYPLALVLSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGARQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADSLEHWLCMNGFPATTIHGDRTQQEREMALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNENNSSLARALADLMQEANQEVPAWLSRYAARSSFGGRNRRSGGGRFGGRDFRRESFNSRGGSDYYGAGNSSGGYGASGGYAGGYGPGVTSAWD 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g2407 615 FunFam ATP-dependent RNA helicase RhlB 376 555 - -
Mibi09g2407 615 MobiDBLite consensus disorder prediction 1 131 - -
Mibi09g2407 615 MobiDBLite consensus disorder prediction 1 35 - -
Mibi09g2407 615 Gene3D - 376 555 IPR027417 -
Mibi09g2407 615 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 384 551 IPR001650 -
Mibi09g2407 615 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 238 529 IPR027417 -
Mibi09g2407 615 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 188 373 IPR014001 -
Mibi09g2407 615 CDD DEADc_DDX3_DDX4 158 379 IPR044763 GO:0003724|GO:0005524
Mibi09g2407 615 Gene3D - 113 375 IPR027417 -
Mibi09g2407 615 SMART ultradead3 176 388 IPR014001 -
Mibi09g2407 615 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 127 551 - -
Mibi09g2407 615 Pfam DEAD/DEAH box helicase 181 362 IPR011545 GO:0003676|GO:0005524
Mibi09g2407 615 Pfam Helicase conserved C-terminal domain 397 512 IPR001650 -
Mibi09g2407 615 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 157 185 IPR014014 GO:0003724
Mibi09g2407 615 SMART helicmild6 431 512 IPR001650 -
Mibi09g2407 615 CDD SF2_C_DEAD 385 521 - -
Mibi09g2407 615 FunFam Probable ATP-dependent RNA helicase DDX4 120 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g2407 Mibi-ChrMibi09 43476625 43481320 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g2407 155 544 Eukaryotic Initiation Factors Gene Family AT3G19760 32.225 3.24e-62 210