Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g2397 ATGGCTGGCGTATCCCTCCAGTGCGGTGACTGCGGAGCGCTGTTGAGGTCCGTAGAAGAAGCTCAGGAGCACGCAGAGCTCACCTCCCACTCCAACTTCTCCGAATCCACTGAAGCTGTTCTCAACCTTGTTTGCTCCACTTGTGGCAAGCCATGCCGATCCAAAACCGAGAGTGATTTGCATACAAAAAGAACTGGGCATAGTGATTTTGTTGATAAGACGTCTGAGGCAGCGAAACCTATAAGTTTGGAGGTTCCAAAGGTGGATGCAACATCTAACGAGGATATCACTGCAACCACTGACCAACCTGATGAAATGGTTGTTCCTGACGTTGACAAGAAGGTGCTTGAGGAACTTGAATCAATGGGATTTTCAACTGCACGTGCAACACGTGCACTTCACTATTCTGGTAATGCTAGCCTTGAGGCTGCTGTGAATTGGGTAGTAGAGCATGAGAATGACCCTGACATAGATGAGATGCCCTTGGTACCGGCAAACACCAAAGTGGAGGCTCCTAAACCTTCTCTCACACCAGAACAACTGAAAGCTAAACAACAGGAACTCAGGGAGAAGGCTCGCAAGAAGAAAGAAGAGGAAGAGAAGAGAATGGAAAGAGAAAGAGAAAAGGAGAGGATCCGTATAGGCAAGGAATTACTGGAAGCAAAAAGAATTGAAGAGGAGAATGAGAGAAAACGGTTGTTGGCTTTGCGAAAAGCTGAGAAAGAGGAAGAGAGAAAGGCTAGGGAGAAAATCAAGCAGAAATTAGAAGAAGACAAGAATCGGTTTGGCGAAGATGCGCTGAAAGAAGGCGAAGACTTGGATTACCTCCTGAAGAACCATCCCAAACCATCAAATGTTGTGGAGGAGAAAAAGAGTTCATTGCCTGTTCGTCCTGCTACAAAAGCTGAGCAAATGAGAGAGTGCTTGCGCTCTCTCAAGCAGAACCACAAGGATGATGAAACGAGACAACCAAACTTTTTAGGAAAGAGTTGGTGCCTTGAATGGGGGAATTGA 1014 0.4645 MAGVSLQCGDCGALLRSVEEAQEHAELTSHSNFSESTEAVLNLVCSTCGKPCRSKTESDLHTKRTGHSDFVDKTSEAAKPISLEVPKVDATSNEDITATTDQPDEMVVPDVDKKVLEELESMGFSTARATRALHYSGNASLEAAVNWVVEHENDPDIDEMPLVPANTKVEAPKPSLTPEQLKAKQQELREKARKKKEEEEKRMEREREKERIRIGKELLEAKRIEEENERKRLLALRKAEKEEERKAREKIKQKLEEDKNRFGEDALKEGEDLDYLLKNHPKPSNVVEEKKSSLPVRPATKAEQMRECLRSLKQNHKDDETRQPNFLGKSWCLEWGN 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g2397 337 Pfam UBA/TS-N domain 113 147 IPR015940 -
Mibi09g2397 337 Coils Coil 216 261 - -
Mibi09g2397 337 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Mibi09g2397 337 MobiDBLite consensus disorder prediction 273 306 - -
Mibi09g2397 337 MobiDBLite consensus disorder prediction 183 208 - -
Mibi09g2397 337 Gene3D - 112 158 - -
Mibi09g2397 337 MobiDBLite consensus disorder prediction 169 208 - -
Mibi09g2397 337 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 110 151 IPR015940 -
Mibi09g2397 337 SUPERFAMILY UBA-like 100 164 IPR009060 GO:0005515
Mibi09g2397 337 Coils Coil 181 213 - -
Mibi09g2397 337 ProSitePatterns Zinc finger C2H2 type domain signature. 45 67 IPR013087 -
Mibi09g2397 337 MobiDBLite consensus disorder prediction 273 287 - -
Mibi09g2397 337 SMART uba_6 112 150 IPR015940 -
Mibi09g2397 337 CDD UBA_PUB_plant 110 158 - -
Mibi09g2397 337 PANTHER F13M7.16 PROTEIN 1 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g2397 Mibi-ChrMibi09 43413457 43424626 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g2397 93 322 C2H2 Transcription Factor Family AT1G04850 70.130 2.06e-72 226