Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g2297 ATGGCGCTTGTTCCCCAACCCCAAGAAGCCGAAGAAGACACCAACGTTGATATTCACACCACACACGGTACTCCCATTCGTTATCTTCCTCTCGATCATCTTTATTCTGCTACATCCCCTTGTCGTGTAACCGCCAGTGGTTCATCTAACGTCATGTCGAAGAAGGTCAAGGCTCGAAAGCTTAATCTTACACACTTTGAGTTCGACCCTGACCATAAGAACTCGCTTGATAAGCCCTCTCTTCTCCATGTCTACTCTCGCCGACATAAGAGGTCCCGGCATTCATCGGAGAGCTTGTCGTTTTTTGATTCTTTGACGCGCCAGGGTGGGCCCACTGAGGATGTTTGTAAAATTGATGATGCTGGAGAGCATCGTGAGGACGGGAATTCTGAGGCTGGGACACTCAAGAAGAAGAAGAGAAAAGTTGGGAATTCGGAATTGTTGAATTTGGGGGTGGATTTGAGTGCATTGGGTACTTTTGATGGGCCTCGGTTGAGGGACTGTCGTAGTCATAATGTTACTAATGTCAGTGATTGTGATTCTAGTATGAAGAAAAATCGTGCCTCATTGGAAAATTCTCCAAAGCCATTGTCTGCATCCCGCACTGTAAAGAGATGGGTCAGGTTGACTTTTGATAATGCTGATCCTGAGACATTGGTTGGACTACGATGCAAGGTTTATTGGCCCATGGATTTGCAATGGTACATTGGTCGAGTCACTGGTTATGACTCAGAAACTAAGATACACAACATTAAATACGAAGATGGCGATGAAGAAAACTTAATTCTTTCAAATGAGAAAATAAGGTTTCATGTTTCCCGTGAGGAGCTGAAGCAATTAAACTTGAGTAGCTGTAACATTTCTGATTATGATGCGGAAGAGCTTCTCGCCTTGGCAGCAAGTTTAGATAATTGTCAAGAGTTTGAGCCTGGCGAAGTCGTATGGGCCAAGCTAACAGGTCATGCAATGTGGCCAGCTCTTGTCATGGATGAATCACTTGCTGGGAATTGTAAAGGCTTAAAATTATTTTCGGGTGGAAGATCTGTTCCTGTACAATTTTTTGGCACACATGACTTTGCAAGGGTTGGACTGCAGCATGTGAAATCGTTTCTCACTGGTCTTCTTTCTCGTCTACACTTGAAGTGCAAGAAACCCCATTTTTTTGAAGGACTAGAAGAGGCAAAACTCTATTTAAGCAAACAGAAGCTTCCTTCTGAAATGCTGCGATCACAGAGAAGGTGCAAAGCTGATGACTGCAAAAATGTACATGGAGAGGATGAAGGATGTACAGATTCAGGAGAAGATTGTTTGGACAACGGATGGGCCTGTACAGCATTGAAAAACATTGAAACTTCTCCTTATGTATTAGGAGACTTAAAAATTTTAAGCCTCGGAAGAATTGTTCATGATTCTGCGAATTTCCGAGATGGGAGTATAATCTGGCCAGAGGGTTACATGGCAGTGAGGAAGTTTACTTCAATTACTGACCCAAAAGTATGCACATCATATAAGATGGAGGTGTTGAGAGATCCTGAGTCAAAAGTTCGACCACTTTTTAGGGTGACACTGGAGGGTGGAGAGCAGTTCAATGGTCCCACAGCTTCTGCTTGCTGGAATAAAATATACAAACGGATAAAAAAAATGGAAGAAGGTGCTTCTGATGTTTCCACTGCAGATGGTAGCTTTGTAAGGGACTATAAATCAGGAACTGATATGTTCGGTTTTTCCAATCCTAAAGTAGCTAAACTTATACAGGGATTATATAAATGCAGCACCTCTTCCAGAAACTTAATGTGCAAGATAGGTTCTGGGAGATATAGTGATCTGCCTGTTGGTTATAGGCAGGTTCATATTGATTGGTTTGACCTCGATAAGTGCAATGTGTGTCACATGGATGAGGAATACGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCCAGATGTTATGGAGAACTAGAACCTTCTAATGGAGTGCTATGGTTGTGTAAGCTATGTCGTTCTGGTGCTCCCGCCCCCCCACCACCTTGCTGCTTATGTCCACTGATTGGAGGTGCAATGAAGCCTACAACAGATGGTCGATGGGCTCATCTGGCATGTGCCATGTGGATACCTGAAACCTGCTTAGCTGATGTCAAGCGGATGGAGCCTATTGATGGGATAAGTAGAATCTGCAAGGACCGCTGGAAGTTGTTATGCAGCATTTGTGGAGTGCCTTATGGAGCTTGCATCCAGTGTTCAAATAATTCTTGTCGAGTGGCTTATCATCCACTTTGTGCACGAGCTGCTGGTCTTTGTGTTGAGCTTGAGAATGAGGACAGGCTCTATCTACTTTCCGTTGATGATGATGAAGATCAGTGCATTCGCTTGCTCTCTTTCTGCAAGAAGCATAGGCATCCATCAAATGATCATTCTAATGCTGATGAACGCATTGGACGAGTTGCCAGTCAATGTTCAGAGTATATACCACCACTGAACCCATCCGGTTGTGCTCGCAGTGAACCATACAATAACATTGGGCGGAGAGGGCGAAAAGAACCTGAAGCACTTGCAGCTGCATCCTTGAAACGCTTGTTTGTAGAAAATCAATCTTATTTGGTTGGTGGACATTGTCAGCATGGAGTGTTAGAAAATGTAGAGCCATCTGGAAGGGGAGTTTGCTCTAAATTCTTTCGTAGCCAGCAACGGCTGAAGATCTCTCAGATTGATGCTTCAAATGGCATACTTTCTATTGCTGAGAAATATATATACATGAGGGAAACCTTTAGGAAACAGCTGGCATTTGGAAAATCAAGAATACATGGATTTGGCATCTTTGCAAAGCATCCATATAAAGGCGGGGACATGGTGATTGAATACACTGGTGAACTTGTTAGACCTTCCATAGCTGATCGGAGAGAGCACTTTATATATAATTCTTTGGTGGGTGCTGGAACATACATGTTTCGAATTGATGATGAACGAGTCATTGATGCTACCAGAGCAGGAAGCATTGCTCATTTGATTAATCATTCTTGTGCGCCAAATTGCTACTCCAGAGTTATTACTGTTAATGGTGATGAGCATATAATAATATTTGCGAAGAGGGACATTAAACAATGGGAGGAGCTCACATATGATTATAGGTTTTTTTCAATTGATGAACGATTACCTTGTTCTTGTGGCTTCCCAAGATGCCGAGGTGTTGTCAATGATACAGAGGCTGAGGAGCGAGCTGCAAAGCTTTATGTACCTCGGAGTGAATTAATAGATTGGGAAGGAGAATAA 3282 0.4308 MALVPQPQEAEEDTNVDIHTTHGTPIRYLPLDHLYSATSPCRVTASGSSNVMSKKVKARKLNLTHFEFDPDHKNSLDKPSLLHVYSRRHKRSRHSSESLSFFDSLTRQGGPTEDVCKIDDAGEHREDGNSEAGTLKKKKRKVGNSELLNLGVDLSALGTFDGPRLRDCRSHNVTNVSDCDSSMKKNRASLENSPKPLSASRTVKRWVRLTFDNADPETLVGLRCKVYWPMDLQWYIGRVTGYDSETKIHNIKYEDGDEENLILSNEKIRFHVSREELKQLNLSSCNISDYDAEELLALAASLDNCQEFEPGEVVWAKLTGHAMWPALVMDESLAGNCKGLKLFSGGRSVPVQFFGTHDFARVGLQHVKSFLTGLLSRLHLKCKKPHFFEGLEEAKLYLSKQKLPSEMLRSQRRCKADDCKNVHGEDEGCTDSGEDCLDNGWACTALKNIETSPYVLGDLKILSLGRIVHDSANFRDGSIIWPEGYMAVRKFTSITDPKVCTSYKMEVLRDPESKVRPLFRVTLEGGEQFNGPTASACWNKIYKRIKKMEEGASDVSTADGSFVRDYKSGTDMFGFSNPKVAKLIQGLYKCSTSSRNLMCKIGSGRYSDLPVGYRQVHIDWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPSNGVLWLCKLCRSGAPAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGISRICKDRWKLLCSICGVPYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRHPSNDHSNADERIGRVASQCSEYIPPLNPSGCARSEPYNNIGRRGRKEPEALAAASLKRLFVENQSYLVGGHCQHGVLENVEPSGRGVCSKFFRSQQRLKISQIDASNGILSIAEKYIYMRETFRKQLAFGKSRIHGFGIFAKHPYKGGDMVIEYTGELVRPSIADRREHFIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCAPNCYSRVITVNGDEHIIIFAKRDIKQWEELTYDYRFFSIDERLPCSCGFPRCRGVVNDTEAEERAAKLYVPRSELIDWEGE 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g2297 1093 MobiDBLite consensus disorder prediction 113 137 - -
Mibi09g2297 1093 ProSiteProfiles FYR domain FYRN motif profile. 451 510 IPR003888 GO:0005634
Mibi09g2297 1093 CDD SET_SETD1-like 917 1065 - -
Mibi09g2297 1093 CDD PHD_ATX1_2_like 625 671 IPR042010 -
Mibi09g2297 1093 SUPERFAMILY Tudor/PWWP/MBT 218 261 - -
Mibi09g2297 1093 SMART set_7 929 1053 IPR001214 GO:0005515
Mibi09g2297 1093 ProSitePatterns Zinc finger PHD-type signature. 626 671 IPR019786 -
Mibi09g2297 1093 SMART fyrn_3 466 510 IPR003888 GO:0005634
Mibi09g2297 1093 ProSiteProfiles Extended PHD (ePHD) domain profile. 679 803 IPR034732 -
Mibi09g2297 1093 SUPERFAMILY SET domain 927 1066 IPR046341 -
Mibi09g2297 1093 PANTHER PHD FINGER PROTEINS 95 1083 - -
Mibi09g2297 1093 SUPERFAMILY Tudor/PWWP/MBT 304 405 - -
Mibi09g2297 1093 Pfam F/Y-rich N-terminus 457 507 IPR003888 GO:0005634
Mibi09g2297 1093 SMART PostSET_3 1053 1069 IPR003616 -
Mibi09g2297 1093 FunFam Histone-lysine N-methyltransferase 862 1086 - -
Mibi09g2297 1093 SMART PHD_3 737 803 IPR001965 -
Mibi09g2297 1093 SMART PHD_3 625 672 IPR001965 -
Mibi09g2297 1093 Pfam PHD-finger 638 672 - -
Mibi09g2297 1093 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 677 805 IPR013083 -
Mibi09g2297 1093 SMART PWWP_4 308 372 IPR000313 -
Mibi09g2297 1093 Pfam PHD-zinc-finger like domain 681 802 - -
Mibi09g2297 1093 SMART fyrc_3 518 598 IPR003889 GO:0005634
Mibi09g2297 1093 Gene3D - 299 408 - -
Mibi09g2297 1093 ProSiteProfiles PWWP domain profile. 310 373 IPR000313 -
Mibi09g2297 1093 MobiDBLite consensus disorder prediction 176 196 - -
Mibi09g2297 1093 Gene3D - 452 592 - -
Mibi09g2297 1093 Pfam F/Y rich C-terminus 516 591 IPR003889 GO:0005634
Mibi09g2297 1093 Pfam SET domain 940 1046 IPR001214 GO:0005515
Mibi09g2297 1093 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 617 676 IPR013083 -
Mibi09g2297 1093 CDD ePHD_ATX1_2_like 688 802 IPR041956 -
Mibi09g2297 1093 CDD TUDOR 221 265 IPR002999 -
Mibi09g2297 1093 ProSiteProfiles SET domain profile. 929 1047 IPR001214 GO:0005515
Mibi09g2297 1093 Pfam PWWP domain 311 398 IPR000313 -
Mibi09g2297 1093 ProSiteProfiles Post-SET domain profile. 1053 1069 IPR003616 -
Mibi09g2297 1093 Gene3D - 217 270 - -
Mibi09g2297 1093 ProSiteProfiles Zinc finger PHD-type profile. 623 674 IPR019787 -
Mibi09g2297 1093 SUPERFAMILY FYVE/PHD zinc finger 616 690 IPR011011 -
Mibi09g2297 1093 ProSiteProfiles FYR domain FYRC motif profile. 514 600 IPR003889 GO:0005634
Mibi09g2297 1093 FunFam Histone-lysine N-methyltransferase 677 805 - -
Mibi09g2297 1093 MobiDBLite consensus disorder prediction 103 137 - -
Mibi09g2297 1093 Gene3D SET domain 873 1082 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g2297 Mibi-ChrMibi09 42449398 42459845 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g2297 601 773 C2H2 Transcription Factor Family AT3G14740 38.068 4.16e-26 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mibi09g2297 zf-HC5HC2H_2 4.1e-33 CL0390