Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g2290 ATGTACCCTTCTTCCTCATCTTCCTCCTCCCAATCCCAAAGCGGCTTAACCCGCTACGGCTCCGCCCCTGGCTCCCTCCTCACCAACGCCGTCGATGCCGTCATCGGATCCTCCGACTCCGCCGTCGGATCACGCCCTCCCCTCGCCCATTTCTTCGCCGGCGAATCCTCCGAAGCTTCCTGTAAGCTCAACCAATCTTCCGATCCCAAAGACCACCACCACCACCCTCACCCTCCCACCCTCGGGTTGCAGCGATCGTACGGCCTCCACGACGGAGGAGGATTTGGCATCTCCTCTTCCGCCGCCTTGCTTCGTCAGAGAAGCTCCCCAGCTGGCTTCCTCAGCCATCTCACTGCTACCCCACCTGATAATGGAGGTTTCTCAATCTCAAGGGGCAGTGGAAGCTATAGCGCACAAGGCGTCTCCAATAGTGGCCATGGAATATCAAGGCTAAAATCTCAATTGAGCTTCACAGGGCAAGAATCTCTTTCACAGATATCAGAGGTTAGCGAACATGTTGATGGCATCAATTCTGACAATGGCCACCATAGAGCTGCACACTCTTATGCCGCAACCAGCTTTGGAATGGACGCCTGGGATGGTTCAAACTCCATTGTGTTTTCTGCTCCCTCTAGTAAACGTGCTAAGAATATTGATGGAGACATTCTGACCTGCATTAATGTCTTGGAATCGCAGTTTAGTCTGCCACAAACAACTCTGGAAATGGCAACGGTGGAGAAGCTACTTCATCAGATTCCTGAAGATTCTGTCCCTTGTAAAATTCGTGCTAAGCGAGGCTGCGCTACTCATCCAAGAAGCATTGCAGAACGGGAGCGACGAACGAGAATTAGTGGCAAGCTGAAGAAGTTGCAAGAGCTGGTGCCTAATATGGACAAGCAAACAAGCTATGCGGACATGCTGGATTTGGCTGTTCAACATATCAGAGGTCTCCAAACTCAAGTTCAGAAGCTCCACAAAGAACTCGAGAATTGCAGCTGTGGATGTAAACAAAACTCATAG 1020 0.5137 MYPSSSSSSSQSQSGLTRYGSAPGSLLTNAVDAVIGSSDSAVGSRPPLAHFFAGESSEASCKLNQSSDPKDHHHHPHPPTLGLQRSYGLHDGGGFGISSSAALLRQRSSPAGFLSHLTATPPDNGGFSISRGSGSYSAQGVSNSGHGISRLKSQLSFTGQESLSQISEVSEHVDGINSDNGHHRAAHSYAATSFGMDAWDGSNSIVFSAPSSKRAKNIDGDILTCINVLESQFSLPQTTLEMATVEKLLHQIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVQHIRGLQTQVQKLHKELENCSCGCKQNS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g2290 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 267 317 IPR011598 GO:0046983
Mibi09g2290 339 SMART finulus 273 323 IPR011598 GO:0046983
Mibi09g2290 339 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 22 329 - -
Mibi09g2290 339 Pfam Helix-loop-helix DNA-binding domain 272 318 IPR011598 GO:0046983
Mibi09g2290 339 MobiDBLite consensus disorder prediction 124 143 - -
Mibi09g2290 339 MobiDBLite consensus disorder prediction 1 22 - -
Mibi09g2290 339 FunFam Transcription factor bHLH130 family 268 337 - -
Mibi09g2290 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 270 333 IPR036638 GO:0046983
Mibi09g2290 339 CDD bHLH_AtbHLH_like 272 324 IPR045239 -
Mibi09g2290 339 Gene3D - 268 338 IPR036638 GO:0046983
Mibi09g2290 339 MobiDBLite consensus disorder prediction 60 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g2290 Mibi-ChrMibi09 42337200 42342311 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g2290 15 337 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 49.300 4.12e-92 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mibi09g2290 HLH 8.5e-09 No_clan