Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g2267 ATGGCATCAACATCGGGTGGTCCCAAGACTCTATTCCCTGTGGCAGAGGCAGCTTCGAACTTTTATCTGTATCCTGCTCCTCTTGCAAAGTTTGATGATGTCGTGGCTGATTCCAGGCTCTTTATGCAAACCTTGGGGAACCTCCACCATTCTATGGGCACCAAGTTCATGATTCCCATTATAGGGGGAAAAGAACTAGATTTGCATCGGCTTTTCTTGGATGTGACTTCTCGTGGAGGCATTCAGAAAGTTATAAGGGAGAGAAAATGGAAAGAAGTAACTGCTGGTTTTGACTTTCCATCTACAGCGACAAATGCTTCTTTTGTGTTGCGGAAGTACTATGGTGCATTGCTTTACCACTATGAACAAATATACTACTTTAAGGCCGTGGGATGGGCATGTGATCCTTCTGATGCACTGCGGAATCCATTGCGGGTGCCAGTTCCTCCTGCTCCAAGAGGGCCGCAGTTTCCGCAACCCCCGGTTAGTGCATCTGGATTGCCTGAAGCTATTTCAGCTGCTTCTGTAGGAACTCCAGTGGCTGGGGTGATTGACGGAAAGTTCGATAGTGGGTATCTTGTTACTGTCACAGTGGGTTCAGAGAAACTTAAAGGTGTACTATATCAGGCTCCACAAAACCCTGCATTGCTAACAATGCTCCAACGCAGTGCTCCAGTTTATAACCCTGACATCTCATCTGCTTTGGGTGTCTATCGTCGACGACGCAAGAAATCTGGGAAAAGAAAGAGAGCTCCTGATCATCCCAAACCTAACCGAAGCGGATACAATTTCTTCTTTGCTGAGCAGCATGCAAGACTGAAACCACTTCACCAAGGGAAGGACCGAGAAATCAGCAGAATAATTGGTGAACTCTGGAACAAATTAGGAGAATCAGAGAAAGCAGTTTATCAAGAGCAGGCTCTTAAGGACAAAGAGAGGTACAAAGCTGAAATGGAGAAATATAGGGAGAAACAGAAAACAGGCCAAGGTGCTGGTGATGCTATGCCACAACCACAAATTCCCGATAAGGACATGATGGATGCTGACTTAGAAGAGGATGATGCCGAGGGATCAGAATCTCCTCAAATACCTGATGAAAGCTGTTCCGGTGAAAGCGACTACGATGATGATACAAGTACAGAGCATGATATGGACATGGATGCACATCCTAGCACGAAAGGAGCGGGTGCTGAATCTAGCGTGGGTGCTGAATCTAGCCAGCTGGGTGCAGAGAAACCATCAAAGGAGAAAGAAGGGAATGATGATGGAGATCAACATGCTCAAAATATGGATGAGAACTCAAGTATGACGGCGAAGTAG 1320 0.4629 MASTSGGPKTLFPVAEAASNFYLYPAPLAKFDDVVADSRLFMQTLGNLHHSMGTKFMIPIIGGKELDLHRLFLDVTSRGGIQKVIRERKWKEVTAGFDFPSTATNASFVLRKYYGALLYHYEQIYYFKAVGWACDPSDALRNPLRVPVPPAPRGPQFPQPPVSASGLPEAISAASVGTPVAGVIDGKFDSGYLVTVTVGSEKLKGVLYQAPQNPALLTMLQRSAPVYNPDISSALGVYRRRRKKSGKRKRAPDHPKPNRSGYNFFFAEQHARLKPLHQGKDREISRIIGELWNKLGESEKAVYQEQALKDKERYKAEMEKYREKQKTGQGAGDAMPQPQIPDKDMMDADLEEDDAEGSESPQIPDESCSGESDYDDDTSTEHDMDMDAHPSTKGAGAESSVGAESSQLGAEKPSKEKEGNDDGDQHAQNMDENSSMTAK 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g2267 439 MobiDBLite consensus disorder prediction 346 360 - -
Mibi09g2267 439 Coils Coil 304 324 - -
Mibi09g2267 439 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 255 322 IPR009071 -
Mibi09g2267 439 SMART hmgende2 254 323 IPR009071 -
Mibi09g2267 439 MobiDBLite consensus disorder prediction 410 428 - -
Mibi09g2267 439 SMART ARID_2 32 122 - -
Mibi09g2267 439 Gene3D - 28 130 IPR036431 GO:0003677
Mibi09g2267 439 MobiDBLite consensus disorder prediction 319 439 - -
Mibi09g2267 439 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Mibi09g2267 439 CDD HMGB-UBF_HMG-box 255 319 - -
Mibi09g2267 439 FunFam High mobility group B protein 15 237 332 - -
Mibi09g2267 439 SUPERFAMILY HMG-box 243 326 IPR036910 -
Mibi09g2267 439 FunFam High mobility group B protein 15 29 142 - -
Mibi09g2267 439 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Mibi09g2267 439 MobiDBLite consensus disorder prediction 237 262 - -
Mibi09g2267 439 Pfam ARID/BRIGHT DNA binding domain 39 122 IPR001606 GO:0003677
Mibi09g2267 439 MobiDBLite consensus disorder prediction 238 254 - -
Mibi09g2267 439 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 13 369 - -
Mibi09g2267 439 Pfam HMG (high mobility group) box 255 322 IPR009071 -
Mibi09g2267 439 SMART bright_3 36 127 IPR001606 GO:0003677
Mibi09g2267 439 Gene3D High mobility group box domain 239 332 IPR036910 -
Mibi09g2267 439 SUPERFAMILY ARID-like 34 131 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g2267 Mibi-ChrMibi09 42000846 42004087 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g2267 26 350 ARID Transcription Factor Family AT1G04880 55.908 6.84e-116 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mibi09g2267 ARID 5.3e-18 CL0123