Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g2261 ATGGCTTCGTCTTTGGAGGAGCTTCTGACAAAGGACGGGTTCAAAAAGGGCAGAAGAATGACCAGGTCGATATCTTCCATGCAGTGTGATGCTGTAACAGCACAGCCACCACGTAACTCTTTCCACAACAAACAAAGGAGACCTTCTATATCTGGTGATAGAATTTTAACTGAGAGAGCAAAGTCTGATCTCTCGCGTTATCAGATCAGAGGTCAATTATTGAATGCTGATACTGGTAAGAACGTGAGGCCAGGAGATAATCTTGATAAAAGAGAAAAACTGGATGAAGAACAGAAGAATATGAACGAGGAGGAAATTTGTAGCAGTACAGAGGTAGGTGCAAAAGTTGATCTAAAATCACCAAAAGATATGCCAAGATTTGAGATAACTGAGATAAGGGAGAAAGAAGATGACAGAATTAAAGACATATATTCAAATGAGGCATCTTATACCCCCAGAGGGAAAGAGAAGGATTCAAGAAATATAAAAGGACATAGGAACTCCTACAGTAGATCTATGAGCAAAAGCTTTGATAACAGTTACAAAAAGCGCCATGAAAAGGTGGCTTCTAATATAGCTCTTGATGAAGTAGCGGTCCGAGCGATTGTTTCCATTCTAAATGGACTTATAAAACGTTTTATAAATGATGAGGACTTCCGGACTAGACTGCGTCACAGTTGTTTCTCTTCATTGAATTTCATTGAGCCAGAAGATAGGAACAGTTCTGAGGCCGAAGTAATAAGAAGTCTTGAACAGGGTATCGAGATGGTGGAACGAGTTGTTGAGGAATCTTTACCTCCAAAAGAATTGAAACGAGCTTCTTTGCAGCTAGGTATTGTTGCAGGTTTGAGTTTAGATGATCTGAAATATGGATTTACATGTGGGGTTCCGAATTATAAGTTGTCAGCTTCTGCTCATCTTTACCTCAGTGCATTATACAAGATTCAGAGAAAAGATACGGTGTCAGCAAAGCATCTTTTGCAAGTGTTTTGTGATTCACCTTTCCAGACTCGGACAACATTGCTGCCTGAACTGTGGGAGGATCTATTTTCTCCACACTTTTTCCAATTGAAAGCATGGTACGATGAGGAAGTTGACAAACTAGCCAGTAGACCAAGCAGAGCAAGAAAACATAATCTTCTTGAAAAAGTCTACAAGCAACATTTGGATTCTGGAACTTACATGTTTGCTGTATACTACAAAAATTGGCTCACTGAAGGAGTTGAGCCTCCATCTGTTCCTTCCATCGATATTCCATCAATCGCTGCCTTGGGAAGCCGGCAGGGAAGTTTGCTCGGCTATTCATCAGAGTTTTCTAGTCCCATTGATTCATTCTCACCTCAACCTACAGTTACTAAAAGTTTCTATCCTTCTGTCTTTGGTAACTTGAACAAACCGGGAATTGATGACCATGAAGATAGTGAGGGGGATGATGACATAGATACTCGTGTCAGAGGCTGTTACGGTTCAGCTGCTATTGAGCAAACATCTACACCTCTATCTGAAATAGTGAAATTCACTGATCAAGATGTCAAAGAAGACTCCACTAAGAATGTACCACTTGTTTCATTGCATTCTAAAGGAATCTCAACGACAGATGACAAAGAGAAGGGAGAAAGAAATCATAGTGATGGCAATGGTCACTCTTCTATTGCCATGCAAACTAATATAAACAATTACATGCTAGACAATGATGAAAAAGAAATTAGTTTTGGAAAGCCAATTAAGACAAGCTCTTTACTTGAAGGATTATCTTTTCCAACCATTCCACAAGAATTTCTTTGTCCTCTTGCTGGAAAATTATTGGAGGAACCAGTAACTATAGAGACCGGACAAACCTTTGAACATGCAGCCCTCAAGTCATGGTTCCAAAAGGGACACAGAACATGTCCCGTAACAGGGGTTACTTTAGTTTTTGTATCTATGCCACTGACTAACATTGTCTTGAAGCGACTGATTCATAATTGGAAGTCAGAACAATTAAGTGAGCTCTTGGATTCCACTTCTTCAATCTCAAACTATTCAATAGAGTCAAAAATAAAGGATAGGGATGAGATTATTACTTCCAAATTAGTGAGTGTTTTTACTGTGTTAAATGAAGAGGACAGAGTAACTTACGCCAAACATCTCATATCCTTGGGGATTTTAGGATTTCTGCTTAGGAGATTCGAAATGGGAAATTTGGATGAGAAAACGCATGTGGCGGCACTCTTGAAAAATTTTATTGGAGTAGACTCTTGTTGCAAATATCAGATAGCAAGAGATATTGATAAAAGATTTCTTCTTGATCTTCTTCACCACAAGGAGTTCACACCAAGAATTAACGCAATATTATTGATTACCAAACTTTTAACATTAAAAAGAAGAAAGGATGTTACTTCATTCTTAAATCGCTTGAAGGGTGAGGATATATCTACTACAATGCATGTTCTTCACATGCACCTCGAGAATTCTCCACCACATCACAAACCTCTCGTTGCTGTCCTTTTGTTGTACTTTGATCTACTGTTCGAGTCACAAAATTATGGCTCATACAGAGACCAGGCTGTGAATTCCATTTCAGAGGCTCTCCACGCCAGCTTAAATGAAGAGAAAGTCCGAGAAAATTGTTGTAGAGCGCTTTTAATCTTGGCTGGGCATTTTTCTTCCACTGGGAAGGTACTGACCAAGAGTAGCATTCTGAAAGAAGTGGGGTATGTAGCCAACAGTTCAGAAGTTGACACTTCTGATCATGAGGAAGAGGATTTATTGTGGGATGGAGCCATTTCATTTGAAAACGAAGAAGAACGGAGCAAAGAGTGGTTGGTGAACTTGTTAGAATCAATGATTGGTGATGGAGAGAGTCGATTTTTGAAGTCTGTCTCTAAATGTTTGGACTCTGGACACCCAGATTTGGTCAGCACATGTTTGATAACTGTTGCTTGGTTGATCTCCTCGCTTTCTATGCAAAATTATGCAGGATTACACCTTGCTGCCTTCTTAGCCGTCATTCCTGAGATAAAACGAGTCCTCAAAAATAGGGAAATCGAACTCAAGATTCTTGCTTCTATGTGCTTATTTAATTTCAGCAAAAAATCAGAATGCAGAGCGCTTTTGACGGCTATGGCGGAAGATATTGATGGTCCTCTTCATGAACTACTTGATGTGACATGGACTGCAAAGCAGCTACATGCGATTTTTTCTGGCGTGGATTTGTAA 3198 0.3959 MASSLEELLTKDGFKKGRRMTRSISSMQCDAVTAQPPRNSFHNKQRRPSISGDRILTERAKSDLSRYQIRGQLLNADTGKNVRPGDNLDKREKLDEEQKNMNEEEICSSTEVGAKVDLKSPKDMPRFEITEIREKEDDRIKDIYSNEASYTPRGKEKDSRNIKGHRNSYSRSMSKSFDNSYKKRHEKVASNIALDEVAVRAIVSILNGLIKRFINDEDFRTRLRHSCFSSLNFIEPEDRNSSEAEVIRSLEQGIEMVERVVEESLPPKELKRASLQLGIVAGLSLDDLKYGFTCGVPNYKLSASAHLYLSALYKIQRKDTVSAKHLLQVFCDSPFQTRTTLLPELWEDLFSPHFFQLKAWYDEEVDKLASRPSRARKHNLLEKVYKQHLDSGTYMFAVYYKNWLTEGVEPPSVPSIDIPSIAALGSRQGSLLGYSSEFSSPIDSFSPQPTVTKSFYPSVFGNLNKPGIDDHEDSEGDDDIDTRVRGCYGSAAIEQTSTPLSEIVKFTDQDVKEDSTKNVPLVSLHSKGISTTDDKEKGERNHSDGNGHSSIAMQTNINNYMLDNDEKEISFGKPIKTSSLLEGLSFPTIPQEFLCPLAGKLLEEPVTIETGQTFEHAALKSWFQKGHRTCPVTGVTLVFVSMPLTNIVLKRLIHNWKSEQLSELLDSTSSISNYSIESKIKDRDEIITSKLVSVFTVLNEEDRVTYAKHLISLGILGFLLRRFEMGNLDEKTHVAALLKNFIGVDSCCKYQIARDIDKRFLLDLLHHKEFTPRINAILLITKLLTLKRRKDVTSFLNRLKGEDISTTMHVLHMHLENSPPHHKPLVAVLLLYFDLLFESQNYGSYRDQAVNSISEALHASLNEEKVRENCCRALLILAGHFSSTGKVLTKSSILKEVGYVANSSEVDTSDHEEEDLLWDGAISFENEEERSKEWLVNLLESMIGDGESRFLKSVSKCLDSGHPDLVSTCLITVAWLISSLSMQNYAGLHLAAFLAVIPEIKRVLKNREIELKILASMCLFNFSKKSECRALLTAMAEDIDGPLHELLDVTWTAKQLHAIFSGVDL 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g2261 1065 Pfam U-box domain 589 660 IPR003613 GO:0004842|GO:0016567
Mibi09g2261 1065 SMART Ubox_2 592 656 IPR003613 GO:0004842|GO:0016567
Mibi09g2261 1065 MobiDBLite consensus disorder prediction 529 544 - -
Mibi09g2261 1065 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 586 642 IPR013083 -
Mibi09g2261 1065 MobiDBLite consensus disorder prediction 1 52 - -
Mibi09g2261 1065 ProSiteProfiles U-box domain profile. 588 663 IPR003613 GO:0004842|GO:0016567
Mibi09g2261 1065 MobiDBLite consensus disorder prediction 151 165 - -
Mibi09g2261 1065 MobiDBLite consensus disorder prediction 145 180 - -
Mibi09g2261 1065 MobiDBLite consensus disorder prediction 525 551 - -
Mibi09g2261 1065 MobiDBLite consensus disorder prediction 464 483 - -
Mibi09g2261 1065 PANTHER OS04G0584500 PROTEIN 577 1061 - -
Mibi09g2261 1065 SUPERFAMILY ARM repeat 704 1048 IPR016024 -
Mibi09g2261 1065 MobiDBLite consensus disorder prediction 21 46 - -
Mibi09g2261 1065 CDD RING-Ubox_PUB 593 634 IPR045210 -
Mibi09g2261 1065 Gene3D - 645 1060 IPR011989 -
Mibi09g2261 1065 SUPERFAMILY RING/U-box 586 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g2261 Mibi-ChrMibi09 41912955 41918827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g2261 587 656 U-box Gene Family AT3G54850 41.429 5.34e-13 71.2