Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g2258 ATGAATAATGTTATTAGAACTAATTATAACAACATGCAAAAATTCAAAGGTGTAGTGCCTCAGCAAAATGGTCATTGGGGTGCTCAAATATATGCAAATCACCAAAGGATATGGCTTGGAACCTTTAAATCTGAACAAGAAGCCGCCATGGCTTACGACAGTGCTACCATCAAGCTGCGGAGCGGGGAAAGCCACAGGAATTTCCCGTGGAACGATCAAACGGTTCAAGAGCCTCTTTTCCAAAGCCATTATAGCACAGAAGCAGTCCTAAGCATGATTAGAGATGGTACCTATCCTTCCAAGTTTTCATCTTTTCTCTTAAGCACACAAACCCTAACCCTAACCCTAAATGCCCATAACGAACATATAACAAAAGCCAGAAATAATGGCGAGGAAAAATTCTCTTGCACCCAGCTTTTCCAAAAGGAGCTTACACCAAGTGATGTGGGTAAACTCAATAGGCTTGTCATTCCCAAAAAACATGCAAGCAGGTATTTCCCTTACATATCTGGCATTACAGAAGAAGCTGATGATATTGATGATCATAATAATTATGGGATGACGATGGACAATATGATTAACAGTGATGATGTTGAGCTTGTGTTTTATGACAAGATAATGAGGTCTTGGAAATTTAGATATTGTTATTGGAGAAGTAGTCAAAGTTTTGTGTTCACCAGAGGTTGGAATAGGTTTGTGAAGGATAAGAGGTTGAAAGCTAAGGATGTTATTGTATTTTATAAGTGTGAGCCTATAATGATTGAAATGGGGATCAATAATATTGGGGGTCAAGTTTTTTATCTGATTGATGTGATTTATAATGAAGATAACATAAATGAGACTTCAAGGACACAGTCTTTTGGGAAAATGTTGAGTTTCAACAATAAAATAGAAGAAGAAGATGAAGAAGAAGAAGATGATGATGATGATGAGACAAAGGAGGGGAAGGAACTATTATCAATGCATTCTCCAACAGATGTTGTTGCACAAAAGGGTTTGAAGCTTTTTGGTGTAAGAATTAACTGA 1026 0.3733 MNNVIRTNYNNMQKFKGVVPQQNGHWGAQIYANHQRIWLGTFKSEQEAAMAYDSATIKLRSGESHRNFPWNDQTVQEPLFQSHYSTEAVLSMIRDGTYPSKFSSFLLSTQTLTLTLNAHNEHITKARNNGEEKFSCTQLFQKELTPSDVGKLNRLVIPKKHASRYFPYISGITEEADDIDDHNNYGMTMDNMINSDDVELVFYDKIMRSWKFRYCYWRSSQSFVFTRGWNRFVKDKRLKAKDVIVFYKCEPIMIEMGINNIGGQVFYLIDVIYNEDNINETSRTQSFGKMLSFNNKIEEEDEEEEDDDDDETKEGKELLSMHSPTDVVAQKGLKLFGVRIN 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g2258 341 CDD AP2 13 71 IPR001471 GO:0003700|GO:0006355
Mibi09g2258 341 FunFam AP2 domain-containing protein RAP2.8 13 70 - -
Mibi09g2258 341 Gene3D - 128 260 IPR015300 -
Mibi09g2258 341 SMART B3_2 140 262 IPR003340 GO:0003677
Mibi09g2258 341 MobiDBLite consensus disorder prediction 298 324 - -
Mibi09g2258 341 ProSiteProfiles B3 DNA-binding domain profile. 140 262 IPR003340 GO:0003677
Mibi09g2258 341 CDD B3_DNA 139 247 IPR003340 GO:0003677
Mibi09g2258 341 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 11 340 IPR044800 GO:0003700
Mibi09g2258 341 ProSiteProfiles AP2/ERF domain profile. 14 69 IPR001471 GO:0003700|GO:0006355
Mibi09g2258 341 Pfam B3 DNA binding domain 140 247 IPR003340 GO:0003677
Mibi09g2258 341 SUPERFAMILY DNA-binding pseudobarrel domain 138 251 IPR015300 -
Mibi09g2258 341 MobiDBLite consensus disorder prediction 298 313 - -
Mibi09g2258 341 SUPERFAMILY DNA-binding domain 14 71 IPR016177 GO:0003677
Mibi09g2258 341 Gene3D AP2/ERF domain 13 70 IPR036955 GO:0003700|GO:0006355
Mibi09g2258 341 Pfam AP2 domain 14 60 IPR001471 GO:0003700|GO:0006355
Mibi09g2258 341 SMART rav1_2 14 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g2258 Mibi-ChrMibi09 41881950 41882975 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g2258 10 271 RAV Transcription Factor Family AT1G51120 58.148 2.81e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Mibi09g2258 B3 1.3e-24 CL0405