Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g2231 ATGGCACGATCAGCTCCCAATGAATGTGAAGCTCTAGTGAGAGAGGAACACCATCAAATTGCATCAGAAGAAGAAGACAGTGGCGCCAATTTCGGCGTGGACACCGGATAATTCAAATTCAAAAGTTCGTTCACACCACTAAGAATAATGGGGCGAGGAAGATTGGCGATGAAACTCATAGAGACAGAAAAATCCAGAAAAACAACCTTTCAGAAGAGAAAGAATGGAATAATGAAGAAAGCTCATGAACTTTCAACTCTCTGTGGAGTTGATTGTTGTGTGATTGTTTATAGCCCTGATAACTACCGTCCCGAGATTTGGCCAAAAAATCACTTCGAGGTGGATAGAATCATTAGTAAGTACAAGCTTAAAACTAAAGAGAAAAGTTCAAAGAAGTACGATGTGATGGAATTCTTCAAGGATAGGAAGAACAAGGTGGAAGCCGAAGCATGCAAGCTCCGGCAAGAGAGACTCCGAAAACTCTACCCGACGTGGGACTTCACATTCGACAAATTTAATGAAGAACAACTAAGAATGTTTGCCGCCTTATTGGATTCCAAGATTGAAAATTGCAAAGAGAGGATCCACATGTTGAAGAAGAAGTGTTACATAAAAGAAAAACAACAACAACAACAAGTAGTATCATTAGCTTCTTCTTCAAGCAGAAGCCACCTCAGCTTCATGCACAATAACAACAACAACAATACTACTAGAATGTTGTCAGCTAATCATCAAACCTTAAGTTTCCCTCTCAAGTCTGATGATGGTAATCATCGTGTGATGCTTCATCCCTTTCATCCAAAGCTGATGCCTCTGACTATGATTTCACATAATAATGATTCTGCTACAGCAGCAACAAAGAATAATGATCCTGCCTTTAGTCATTTTGATGTGATGATGAGAGAATCTTACTGCCCTTCTTCTTCATGGTGTTACACTAATGATAGTATTAATAGTAGTAGTAATTATCCTTATCTGCAGAATGATGGTAATAATATGCAGATTCAAAAGTATCACCATGAAGCAAATTTGCTGGTGAATGATACTCCAGCTGCTCCTATGATGAAGCAAGAATTTCAAACTCATGATTATGGGTATAATAATCAACATGATCAGCTGCTTCAAGTTCTTCGTCATCAGAAGTTCAATTATATAGACCATAAGAAGTAA 1170 0.3829 MARSAPNECEALVREEHHQIASEEEDSGANFGVDTGXFKFKSSFTPLRIMGRGRLAMKLIETEKSRKTTFQKRKNGIMKKAHELSTLCGVDCCVIVYSPDNYRPEIWPKNHFEVDRIISKYKLKTKEKSSKKYDVMEFFKDRKNKVEAEACKLRQERLRKLYPTWDFTFDKFNEEQLRMFAALLDSKIENCKERIHMLKKKCYIKEKQQQQQVVSLASSSSRSHLSFMHNNNNNNTTRMLSANHQTLSFPLKSDDGNHRVMLHPFHPKLMPLTMISHNNDSATAATKNNDPAFSHFDVMMRESYCPSSSWCYTNDSINSSSNYPYLQNDGNNMQIQKYHHEANLLVNDTPAAPMMKQEFQTHDYGYNNQHDQLLQVLRHQKFNYIDHKK 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g2231 389 Coils Coil 181 201 - -
Mibi09g2231 389 PANTHER MADS BOX PROTEIN 52 196 - -
Mibi09g2231 389 CDD MADS_SRF_like 51 132 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mibi09g2231 389 SUPERFAMILY SRF-like 50 126 IPR036879 GO:0003677|GO:0046983
Mibi09g2231 389 Gene3D - 62 145 IPR036879 GO:0003677|GO:0046983
Mibi09g2231 389 ProSiteProfiles MADS-box domain profile. 50 101 IPR002100 GO:0003677|GO:0046983
Mibi09g2231 389 PRINTS MADS domain signature 52 72 IPR002100 GO:0003677|GO:0046983
Mibi09g2231 389 PRINTS MADS domain signature 87 108 IPR002100 GO:0003677|GO:0046983
Mibi09g2231 389 PRINTS MADS domain signature 72 87 IPR002100 GO:0003677|GO:0046983
Mibi09g2231 389 SMART madsneu2 50 109 IPR002100 GO:0003677|GO:0046983
Mibi09g2231 389 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 60 101 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g2231 Mibi-ChrMibi09 41640057 41645710 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g2231 50 263 Type I MADS-box Gene Family AT5G55690 31.405 7.63e-24 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mibi09g2231 SRF-TF 1.9e-20 No_clan