Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g2225 ATGACGATTTTGATCTGTTGTTTGTTGTGTTTTGAGTTTTTTCGTTATCTACCCGGGAAAATGGCGCAGAGTAACTGGGAAGCAGATAAGATGCTTGATGTTTATATCTATGATTATTTGGTGAAGAAGAAATTGCATAATACTGCCAAGTCATTCATGACTGAAGGAAAGGTTGCGCCAGATCCAGTAGCAATTGATGCTCCTGGAGGGTTTCTTTTTGAGTGGTGGTCTGTGTTCTGGGATATTTTTATTGCGAGGACAAACGAGAAACATTCCGAATCTGCTGCAGCATATTTGGAGGCTCAACAGATTAAAGCAAAAGATCAGCAGCAGCTGCAGATGCAGCAATTGCAACTTATGCGTCAAGCTCAGCTTCAGAGGAGGGATCCTAATCATCCTCCTCTTGCCGTTGGCGGTACTATAAATGCTATGTCTTCTGAAGGTATGCTTGGACAGCCTACTGCCAGTGCATTGGCTGCTAAAATGTACGAGGATCGGATGAAACACTCTAACCCAATGGATACTGAGACATCCCAGCCACTTATAGATGCTAGAATGGCCCTTTTGAAGTCAACGACAAGTCATCCTGGTCAGATGGTTCAAGGAAATACTGGAAGTGTGACTGCAGCGTTGCAGCACATGCAGGCTCGAAATCAGCAAACTCCTCAGGACATTAAAAGTGAAGTCAACATGGGCACGATGCAAAGATCTTTGCCCATGGATCCTTCTTCAATTTATGGGCAGGGGGCAATGCAGTCAAAACCAGGAATAGTAAATCCAGGGCTGAATCCAGGAGTTAGTGGTCTCACACTGAAAGGATGGCCTTTAACTGGCATAGATCAAATTCGGCCAGGTTTAGGAGCACAAGTTCAAAAACCTCTCCTTCAAAGTGCAAATCAGTTCCAGCTTTTGCCCCAACAACAACAACAACAACTCTTGGCACAGGTTCAGGCACATGGAAACATTACCAGTTCGCCAATGTACGCAGATATGGATCCTCAACGGCTGAGGGGATTAGCTAGGGGTAGTTTGAATGCAAAAGATGGCCAACCTATTGGAAATGATGGATCAATTGGTTCTCCAATGCAATCCACTTCATCTAAGATTAACATGCCACAGATGCAACAATCTACCACTCAGCAACAGCAGGATCCGTTGCACCCACAGCAACTGCAGCAGAATAACCGGAAAAGGAAAGGGCCTACATCTTCAGGAGCTGCCAACAGCACTGGTACAGGAAACACAATCGGCCCTTCTAATTCCCAACCATCAACCCCATCGACTCATACGCCTTGTGATGGAGTAGCCATGGCTGGTAACTTGCAGAATGTTGGTGGTGTATCCAAAGGGTTGATGATGTATGGTGCTGATGGCACTGGTGGTCTTGCATCGTCCACAAATCAACTGTTGCAGGATGACATGGATCGTTTTGGAGATGTTGGCTCCTTGGATGATAATGTGGAGTCATTCCTTTCACAGGATGATGGTGATGGAAGAGATTTGTTTGGCACCTTGAAACGGAACACTTCGGAGCACACAACAGATGCTTCAAAAGGCTTTTCATTTAGTGAAGTTGGCTCCATACGCAAGAGCAATGGCAAAGTTGTTTGCTGTCATTTCTCGACAGATGGGAAGTTATTGGCCAGTGCTGGACATGACAAGAAGGTTTTTCTGTGGAACATGGAGACACTACAAACAGAGAGCACTACAGAGGAACACACTCTTATTATTACTGATGTTCGCTTCAGACCAAATTCATCTCAGCTTGCAACTTCTTCATTTGATACAACTGTGCGGCTTTGGGATGCTTCAGATCGAAACTACTTTTGTTTGCAGACATATGCGGGTCATACCTCTCATGTGATGTCCCTTGATTTCCACCCTAAGAAAAATGACCTTTTCTGTTCTTGCGATGCCAACAGTGAAATTCGCTATTGGAATATTAATCAATATTCCAGCACTCGCATTTCCAAGGGAGGCTCAGCTCAGGTTAGGTTTCAGCCAAGAATAGGACACCTTCTAGCTGCAGCGGCTGGTAATGTTGTATCCCTCTATGATGTTGAGACTGACAGGCCGATGCAGTCATTACAGGGTCATACTACTGATGTGCATTCTGTTTGTTGGGATACCAATGGAGATTACTTGGCATCTGTGAGTCAAGAATCGGTCAGAGTGTGGTCATTGACCTCTGGAGAGTGCATTCACGAGCTTAGCCCAAGTGGGAACATGTTCCATTCTTGTGTTTTTCACCCAAGCTACTCCACTCTCTTGGTTATTGGTGGTTACCAGTCATTGGAGCTATGGAACATGGCGGAGAATAAATGCATGACAATACCAGCTCATGAGTGTGTGATATCAGCTTTAGCACAATCACCAGTTTCAGGAATGGTTGCTTCTGCAAGTCATGACAAGTCCGTCAAGATTTGGAAATGA 2433 0.4492 MTILICCLLCFEFFRYLPGKMAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMTEGKVAPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAAAYLEAQQIKAKDQQQLQMQQLQLMRQAQLQRRDPNHPPLAVGGTINAMSSEGMLGQPTASALAAKMYEDRMKHSNPMDTETSQPLIDARMALLKSTTSHPGQMVQGNTGSVTAALQHMQARNQQTPQDIKSEVNMGTMQRSLPMDPSSIYGQGAMQSKPGIVNPGLNPGVSGLTLKGWPLTGIDQIRPGLGAQVQKPLLQSANQFQLLPQQQQQQLLAQVQAHGNITSSPMYADMDPQRLRGLARGSLNAKDGQPIGNDGSIGSPMQSTSSKINMPQMQQSTTQQQQDPLHPQQLQQNNRKRKGPTSSGAANSTGTGNTIGPSNSQPSTPSTHTPCDGVAMAGNLQNVGGVSKGLMMYGADGTGGLASSTNQLLQDDMDRFGDVGSLDDNVESFLSQDDGDGRDLFGTLKRNTSEHTTDASKGFSFSEVGSIRKSNGKVVCCHFSTDGKLLASAGHDKKVFLWNMETLQTESTTEEHTLIITDVRFRPNSSQLATSSFDTTVRLWDASDRNYFCLQTYAGHTSHVMSLDFHPKKNDLFCSCDANSEIRYWNINQYSSTRISKGGSAQVRFQPRIGHLLAAAAGNVVSLYDVETDRPMQSLQGHTTDVHSVCWDTNGDYLASVSQESVRVWSLTSGECIHELSPSGNMFHSCVFHPSYSTLLVIGGYQSLELWNMAENKCMTIPAHECVISALAQSPVSGMVASASHDKSVKIWK 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g2225 810 PRINTS G protein beta WD-40 repeat signature 797 810 IPR020472 -
Mibi09g2225 810 PRINTS G protein beta WD-40 repeat signature 589 603 IPR020472 -
Mibi09g2225 810 PRINTS G protein beta WD-40 repeat signature 547 561 IPR020472 -
Mibi09g2225 810 ProSiteProfiles Trp-Asp (WD) repeats profile. 696 736 IPR001680 GO:0005515
Mibi09g2225 810 ProSiteProfiles Trp-Asp (WD) repeats profile. 778 810 IPR001680 GO:0005515
Mibi09g2225 810 SMART Lish 28 60 IPR006594 GO:0005515
Mibi09g2225 810 SMART WD40_4 607 647 IPR001680 GO:0005515
Mibi09g2225 810 SMART WD40_4 521 560 IPR001680 GO:0005515
Mibi09g2225 810 SMART WD40_4 730 769 IPR001680 GO:0005515
Mibi09g2225 810 SMART WD40_4 771 810 IPR001680 GO:0005515
Mibi09g2225 810 SMART WD40_4 689 727 IPR001680 GO:0005515
Mibi09g2225 810 SMART WD40_4 563 602 IPR001680 GO:0005515
Mibi09g2225 810 SMART WD40_4 650 686 IPR001680 GO:0005515
Mibi09g2225 810 Gene3D - 503 660 IPR015943 GO:0005515
Mibi09g2225 810 SUPERFAMILY WD40 repeat-like 522 810 IPR036322 GO:0005515
Mibi09g2225 810 ProSiteProfiles Trp-Asp (WD) repeats profile. 614 656 IPR001680 GO:0005515
Mibi09g2225 810 ProSitePatterns Trp-Asp (WD) repeats signature. 547 561 IPR019775 -
Mibi09g2225 810 ProSiteProfiles Trp-Asp (WD) repeats profile. 570 602 IPR001680 GO:0005515
Mibi09g2225 810 Pfam WD domain, G-beta repeat 571 602 IPR001680 GO:0005515
Mibi09g2225 810 Pfam WD domain, G-beta repeat 610 647 IPR001680 GO:0005515
Mibi09g2225 810 Pfam WD domain, G-beta repeat 692 727 IPR001680 GO:0005515
Mibi09g2225 810 Pfam WD domain, G-beta repeat 776 810 IPR001680 GO:0005515
Mibi09g2225 810 Pfam WD domain, G-beta repeat 533 560 IPR001680 GO:0005515
Mibi09g2225 810 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 528 563 - -
Mibi09g2225 810 CDD WD40 524 810 - -
Mibi09g2225 810 ProSiteProfiles Trp-Asp (WD) repeats profile. 528 569 IPR001680 GO:0005515
Mibi09g2225 810 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 614 649 - -
Mibi09g2225 810 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 21 810 IPR044716 GO:0003714
Mibi09g2225 810 Gene3D - 661 810 IPR015943 GO:0005515
Mibi09g2225 810 Pfam LisH 30 56 IPR006594 GO:0005515
Mibi09g2225 810 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 570 602 - -
Mibi09g2225 810 MobiDBLite consensus disorder prediction 356 431 - -
Mibi09g2225 810 ProSiteProfiles LIS1 homology (LisH) motif profile. 28 60 IPR006594 GO:0005515
Mibi09g2225 810 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 778 810 - -
Mibi09g2225 810 MobiDBLite consensus disorder prediction 344 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g2225 Mibi-ChrMibi09 41567121 41575371 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g2225 522 770 U-box Gene Family AT2G33340 27.068 1.03e-16 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Mibi09g2225 WD40 0.0041 CL0186