Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g2210 ATGTCCGGACCGAAAAGTGAACCAAGCGCCTCCAACAAGCGAGCGAGTTTGTTCGAAGAAGCTTCATCCTTCGCTCATTTCAGTCCTCGTCATTCTCTTACAATCTTACACTGCTCAAAAAAAGGAACACTGTTATTCCACCAACTAATCATGCAAGCAACTCAAGCAGCAGCTGCGAATGAAACTGCAGACAATTCACAAAAGACTGATCTTCAGCCAAACAAAGAAGTTTCAGATAATGGACCAAGTGGGAGGCGACCAGATATTTCACTTCAAATACCACCTAGACATTTAGGGTTTGGAAGCACGCGCAATGTAAGGTCTCTGGACCATTCTCAAAGCTTCTCCAGAGGGATTCCATCGCCACGAGGCTTTTTGCGGGCTTTGAGCCTCAAAAGGAAAGGCAATACAGCAGATGCTGAAAGAAGCAGCCTCCTCAATTCTGATCCCAAGGCAGCTCCTGGTAGTCCAAATATGGCCAACTTTACATCTGCAATGTCATGGCAGAGATGTACTTCTCTTCCTGTTACGCCTGCTACAAATCTTTCTCCTTCAGTTTCTACACCTGCTTCTGCAAGGACATACAATGAACAGCCTAAACGCCATAAAGATGTTGCTGCTGTTTCGAAGGTTTCAAGGTCCCTCTCTGTGCCTGGGCGGAATATGGTTATTGTAAGATCTTTGTCTTTTGCTGCCCGAAGTGAGCATGCACAGCAAGATTTGAATGATGATCAAATAACTCCTGTGCCAGTAGAAGATGCTGATCAAGAAATTCCTGAAGAGGAAGCAGTTTGCAGAATCTGTTATGATGTCTGTGATGAACGGAACACCCTCAAATTGGAGTGCAGCTGCAAAGGCGACTTGAGACTTGTTCATGAAGAATGTGCAATTAAATGGTTTTCCACGAAAGGAAATAAGAAATGTGATGTTTGTGGCCAAGAAGTTCAGAATTTACCTGTAACATTGCTTCGTTTGCCCAGCTCTGCTCAGACAGGAAGGGGACAGGTGCATGGTCAGCAGAACATTCATCCTGAGACATTAAGTGCTTGGCAAGACTTTGTGGTGCTTACCCTAATAAGCACAATATGCTATTTTTTCTTCCTGGAGCAGCTACTGCTTCCTGACATGAAGACTCAAGCAATCATTATAGCTGCACCATTTGCCTTTACCTTGGGTCTCCTGGCATCTATTTTTGCAGTCATCCTTGCAATAAAAGAGTATATATGGACATATGCTGCTCTCGAGTTTGCTCTTGTGGCTATAACAGTACACGTGTTCTATAGTATGCTGCATTTGAAGGCCATTTATGCAATACTGCTTTCATCAGTTTTGGGTTTTGGTATGGCTATGAGCATCAACTATGCATATATCCAGTATGTATCTTGGCGTCTTCAAGTCTCCCAGGATTCCAATCCAGTGTGA 1422 0.4388 MSGPKSEPSASNKRASLFEEASSFAHFSPRHSLTILHCSKKGTLLFHQLIMQATQAAAANETADNSQKTDLQPNKEVSDNGPSGRRPDISLQIPPRHLGFGSTRNVRSLDHSQSFSRGIPSPRGFLRALSLKRKGNTADAERSSLLNSDPKAAPGSPNMANFTSAMSWQRCTSLPVTPATNLSPSVSTPASARTYNEQPKRHKDVAAVSKVSRSLSVPGRNMVIVRSLSFAARSEHAQQDLNDDQITPVPVEDADQEIPEEEAVCRICYDVCDERNTLKLECSCKGDLRLVHEECAIKWFSTKGNKKCDVCGQEVQNLPVTLLRLPSSAQTGRGQVHGQQNIHPETLSAWQDFVVLTLISTICYFFFLEQLLLPDMKTQAIIIAAPFAFTLGLLASIFAVILAIKEYIWTYAALEFALVAITVHVFYSMLHLKAIYAILLSSVLGFGMAMSINYAYIQYVSWRLQVSQDSNPV 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g2210 473 MobiDBLite consensus disorder prediction 178 195 - -
Mibi09g2210 473 Pfam RING-variant domain 265 311 IPR011016 GO:0008270
Mibi09g2210 473 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 319 IPR013083 -
Mibi09g2210 473 MobiDBLite consensus disorder prediction 178 200 - -
Mibi09g2210 473 MobiDBLite consensus disorder prediction 137 161 - -
Mibi09g2210 473 SUPERFAMILY RING/U-box 261 315 - -
Mibi09g2210 473 SMART ringv_2 264 312 IPR011016 GO:0008270
Mibi09g2210 473 MobiDBLite consensus disorder prediction 60 79 - -
Mibi09g2210 473 MobiDBLite consensus disorder prediction 60 104 - -
Mibi09g2210 473 CDD RING_CH-C4HC3_MARCH 265 312 - -
Mibi09g2210 473 ProSiteProfiles Zinc finger RING-CH-type profile. 257 318 IPR011016 GO:0008270
Mibi09g2210 473 PANTHER OS02G0165000 PROTEIN 82 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g2210 Mibi-ChrMibi09 41351669 41356097 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g2210 278 373 C3H Transcription Factor Family AT5G59000 33.333 6.67e-11 60.5