Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g2134 ATGGATCCTTTCTCATCTTCCTCTTCTCTCCCTCCTCCTCCTACCCCTCTTTCCGGCATTCTCCCAACATCTCCCTCATCCTCTTCTGCTGCTTTCGACGACGACGCTTCCGATGACTCCTGCAGTATTTGTCTTGAGCCCTTTAGCACCGATGACCCTGCTACTATAACAAATTGCAATCATGAATATCATCTGCACTGTATTCTTGAATGGTCTCAGAGAAGCAAAGAGTGTCCAATCTGTTGGCAGATACTTGTCTTGAAAGAACCAGCCAACCAAGAACTTCTGGCTGCAGTGGAAGCTGAAAAACGCATAAGGTCAAGAAGCTCACATTCATCTGCATTCCTATATCCTCGCGTCCCCATTGAACGGCATAGCGTCGATCACGATGATTCTTGTTCAGACGACTCTGATTTTGATGAACAAATTATGCAGCACCTGGTTGCTGCTGCAAGTAGAGCACATTATTTTCGTAGACGGGAAATGCAAAGATCATCTGGAGTAGGTCCATCTCGGATTCCTGCAGTTGACTCTTCATCTCATGCCTCTGGGCTGCAGCCAATGAATACTACCTCGCCTTCTGGAGTCAGTTCACCTAATTCCAGTTCTGCTGCAGACATTCAACCTCCACCATCTGCTCCTTCCCCCGTCGAAGCAATTATAAGAAATTCCTCTCCTGAAACTGATGACCCTTCCAAAGCCAGAGTCCTTTATAGCCAGCTGCCATCTGAGAGTGTGAGAAGACTGAACACTTCTGAGATGTTTTCCTTCCCTGAGTCCATCAAGACCAAATTTTCTGCTGCCTCAGCGAGATATAAAGAATCTATTTCAAAAAGTACACGCGATCTCAAAGAGAAGTTGCTTGCTCGTAATGCTTCAGTAAAAGAGCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCTGGCATTGCTGGTGTTGCACGTATGATTGAACGCCTTGATCTCGCCTCAAAACGGGCCACTGCTTCTCCTATGCCAAGCTCTACCGTGGTAACTTCTGGCATCCTCTTTAAGGGAAAGACTGTACAAGAAAATGGTAGTGGACAGCCTCTTCACTCTGCTGTTAAGGAAGGGAGTGGAGTTGTCATTCATGATGTTAGATCAGGCCCACATGCACAGGTTTCCAGTGCGGCTGTTAGTCCGGTAGAAGAATATCCTCAACCACATGTTCAGTTGGCTGATTCTTTCCCATGTCCTCAATTTTTAACATCCAGAGTGGACTGGATGAGGTAA 1251 0.4644 MDPFSSSSSLPPPPTPLSGILPTSPSSSSAAFDDDASDDSCSICLEPFSTDDPATITNCNHEYHLHCILEWSQRSKECPICWQILVLKEPANQELLAAVEAEKRIRSRSSHSSAFLYPRVPIERHSVDHDDSCSDDSDFDEQIMQHLVAAASRAHYFRRREMQRSSGVGPSRIPAVDSSSHASGLQPMNTTSPSGVSSPNSSSAADIQPPPSAPSPVEAIIRNSSPETDDPSKARVLYSQLPSESVRRLNTSEMFSFPESIKTKFSAASARYKESISKSTRDLKEKLLARNASVKELSKGVQREMNAGIAGVARMIERLDLASKRATASPMPSSTVVTSGILFKGKTVQENGSGQPLHSAVKEGSGVVIHDVRSGPHAQVSSAAVSPVEEYPQPHVQLADSFPCPQFLTSRVDWMR 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g2134 416 SUPERFAMILY RING/U-box 35 88 - -
Mibi09g2134 416 Pfam Ring finger domain 39 81 IPR001841 -
Mibi09g2134 416 MobiDBLite consensus disorder prediction 1 34 - -
Mibi09g2134 416 MobiDBLite consensus disorder prediction 162 234 - -
Mibi09g2134 416 CDD RING-H2 43 81 - -
Mibi09g2134 416 MobiDBLite consensus disorder prediction 1 20 - -
Mibi09g2134 416 ProSiteProfiles Zinc finger RING-type profile. 41 81 IPR001841 -
Mibi09g2134 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 26 98 IPR013083 -
Mibi09g2134 416 SMART ring_2 41 81 IPR001841 -
Mibi09g2134 416 MobiDBLite consensus disorder prediction 172 208 - -
Mibi09g2134 416 FunFam E3 ubiquitin-protein ligase RHF1A 24 93 - -
Mibi09g2134 416 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 7 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g2134 Mibi-ChrMibi09 40665795 40668782 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g2134 39 89 C3H Transcription Factor Family AT4G23450 50.980 2.64e-13 65.5