Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g2133 ATGCCCATGGATGCCCTCTCACCTGCACAGCTTCTTCCCATTTCCTTTGTGAAGCCAACTCCTACTTGTTTTCTTCCCCACTCTAAAAATCATACCTTTAATTTTTTCTTTCCCACGTATCCTACCAACCCTGGTCTCCGCTTCATCTCCAAGTTCAGAACTCCACAATCCCTTTTAAATACATCTTCCTTGGCACACGGAGCAGTTGATAAAGTCGGTTCTCCTACGTTGAGGGAAATATGCGAAATTCATGTTCCCCAGCATATACTAGACAGGATGGAGGAGATTGGATATGTCATGCCTACAGATGTCCAGAGGCAAGCATTGCCTTCTCTTTTATCTGGTCGTGATGGCATACTTCATGCTCAGACAGGTTCTGGGAAGACGCTTGCATACCTGCTTCTGATATATTCTGTCATAAACACAGCAAAATCTTCTGTGCAAGCTCTTGTGGTGGTGCCCACCCGTGAACTTGGCATGCAAGTTGCTAAAGTTGCTAGGATGCTAGCAGCAAGTCCGACAGGGGTTGAGGAGGAGCACAAGTCATGTACCGTTATGGCTCTTTTAGATGGAGGAACATTGAGAAGACACAAGAGTTGGCTAAAGGCAGAGCCACCAATGATAGTGGTAGCAACAGTGGGGTGTTTATGCCACATAATTGAAAGACAATTTTTAAAGCTTGAAACTGTGCGGGTGTTAGTAGTTGATGAGGTTGACTTTATTTTCAATTCTTCAAAGCAAGTTAGTTCCCTACGGAAGCTTTTAACTTTGTATTCTTCATGCAATAACCGTCAAACGGTTTTTGCTAGTGCATCTATACCACAACACCGACGATTTCTTCATGATTGTGTGCAGCAGAAATGGACTAAGAGTGACGTGGTCCATATTCATGTCAGCCCAGTTGAGCCCATGCCAGCACGCCTGCATCATAGATTCGTAGTATGTCATAAGAACAAGAAGCAACAAATCCTGTTATCTTTGATACAATCTGATTCACCTGAGTCTGGCATTATATTTGTCAATGAGCAGTCTGAGAGGTCAAAACGGGCAGGAAATGCTCCATCGACATCCCTTCTGATTGACTTTCTAAAGGCTTCATATCTAGGTTCTTTAGATATCCTCCTTCTTGAGGAAGACATGAATTTCAATTCACGAGCTGTTTCACTGTTGGAGATAAGGAAAGGTGGCGGCTATCTTCTTGTAGCGACAGATATAGCTTCGAGAGGAGTTGACCTTCCAGAAATGTCTCACATCTACAACTTTGATCTGCCCAAGACTGCCATAGATTATCTTCATCGGGCAGGTAGAACTTGTAGGAAACCTTTTTCTGACATGAAATGTACTGTTACCACTATCATTGTTCCAGAGGAGAGGTTTGTTCTCCAGAAGTATGAAAATGAGTTAATGTTCATTTGTGAAGAGCTTACTTTATAA 1434 0.4289 MPMDALSPAQLLPISFVKPTPTCFLPHSKNHTFNFFFPTYPTNPGLRFISKFRTPQSLLNTSSLAHGAVDKVGSPTLREICEIHVPQHILDRMEEIGYVMPTDVQRQALPSLLSGRDGILHAQTGSGKTLAYLLLIYSVINTAKSSVQALVVVPTRELGMQVAKVARMLAASPTGVEEEHKSCTVMALLDGGTLRRHKSWLKAEPPMIVVATVGCLCHIIERQFLKLETVRVLVVDEVDFIFNSSKQVSSLRKLLTLYSSCNNRQTVFASASIPQHRRFLHDCVQQKWTKSDVVHIHVSPVEPMPARLHHRFVVCHKNKKQQILLSLIQSDSPESGIIFVNEQSERSKRAGNAPSTSLLIDFLKASYLGSLDILLLEEDMNFNSRAVSLLEIRKGGGYLLVATDIASRGVDLPEMSHIYNFDLPKTAIDYLHRAGRTCRKPFSDMKCTVTTIIVPEERFVLQKYENELMFICEELTL 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g2133 477 SMART helicmild6 357 441 IPR001650 -
Mibi09g2133 477 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 78 468 - -
Mibi09g2133 477 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 109 291 IPR014001 -
Mibi09g2133 477 CDD DEADc 89 284 - -
Mibi09g2133 477 SMART ultradead3 97 311 IPR014001 -
Mibi09g2133 477 CDD SF2_C_DEAD 308 439 - -
Mibi09g2133 477 Pfam DEAD/DEAH box helicase 102 275 IPR011545 GO:0003676|GO:0005524
Mibi09g2133 477 Gene3D - 305 474 IPR027417 -
Mibi09g2133 477 Gene3D - 60 288 IPR027417 -
Mibi09g2133 477 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 319 477 IPR001650 -
Mibi09g2133 477 Pfam Helicase conserved C-terminal domain 320 439 IPR001650 -
Mibi09g2133 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 444 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g2133 Mibi-ChrMibi09 40656725 40660959 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g2133 79 475 Eukaryotic Initiation Factors Gene Family AT1G72730 26.150 1.36e-27 112