Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g2126 ATGGCTCAGCTGCAGAGCCCCATTGATCATGCCCAGAAGACCAAGACTCTCATTTCTGCTCTCAACCTTGTCTCCCGTAACCTCCCTTTGCCTCCTGATCTTTTCAACACCGTTTCTTCCATCTATCACGCCGCCCAAGATGATGACCGTGAACTCGAGGGTCCTGATGGGAGTGTTGGTGGGGCCGGATCTGAGGAGAAACAGGTGGATGCCCATGCCGACTTGGTCTTGGATAATACAGGAAATTCTAGGGAAAATTTGTTGACGGATCTTGAGGATGCACTATTTAAACAACGACCAAGTTGTGTGTCAGGTTACAAATTGAAGGAAGAAAGGGAAAGCCGTTTTAAAAGTCAGATTCAGCGCCGGTTAAATGAACTAGAAGGATTGCCTTCAAGTAGGGGGGAGGACTTGCAGACAAGGTGCCTGCTTGAACTGTATGGACTGAAGCTAACAGAGTTGCAGAGGAAGGTACGGTCTGATGTGAGTGCTGAATACTGGCTCAATGTTAAATGTGCATATCCTGACAGGCAGTTGTTTGATTGGGGAATGATGCGGTTGCGTCGTCCTATGTATGGTGTTGGAGATCCCTTTGCCATGGATGCTGATGATCAGTTAAGGAAGAAAAGGGATGCTGAGAGATTGTCAAAATTAGAAGAGGAGGAAAAGAATCAAATAGAGACCAGAAAAAGAAAATTTTTTGCGGAAATACTTAATGCTGTCCGCGAGTTCCAATTACAAATCCAAGCTTCTTTGAAACGAAGAAAACAGAGAAATGATGGGATCCAGGCATGGCATGGAAGGCAAAGACAACGTGCCACACGGGCTGAGAAATTGAGGTTTCAAGCCTTAAAGGCTGATGATCAAGAAGCTTATATGAGAATGGTCAAGGAGAGTAAGAATGAAAGATTGACTTTGCTTCTTGAAGAAACAAATAAGTTGCTTGTGAATTTGGGAGCAGCTGTTCAACGTCAAAAGGACTCAAAATTAACAGATGGCATTGAACCTTTGGAAGACTCAGAAGCTGAACTACCAGAGTCAGATGGTTCAAAGAATGGAATATCCAAGGAATCACCTAATGAGGAAGATGCTGATATGGTAGATTCTGATCATAACGGTGACACTAGTGATTTACTTGAAGGTCAACGGCAATACAACTCTGCCATACATTCAATTCAAGAGAAGGTAACTGAGCAACCTTCTATTCTTCAAGGTGGAGAGTTAAGACCGTATCAGTTAGAAGGGCTTCAGTGGATGCTTTCTTTGTTCAATAACAACCTTAATGGAATTTTGGCAGATGAAATGGGTCTGGGTAAGACAATACAAACAATTTCTTTGATAGCATATCTTATCGAGAACAAGGGTGTGACTGGTCCCCACTTGATTGTGGCTCCAAAGGCTGTTCTGCCAAATTGGATCAATGAATTCTCGACATGGGTTCCAAGCATTACAACTGTTCTTTATGATGGAAGGCTGGATGAGCGAAAGGCAATGAAGGAGGAAATATCAGGAGAGGGAAAGTTTAATGTTCTGATAACACACTATGATCTTATAATGAGAGATAAGGCGTTTCTCAAGAAAATTAATTGGTTCTACTTGATTGTGGATGAAGGGCATCGATTAAAGAATCATGAGTGTGCTCTGGCGAGAACTCTTGACTCTGGCTATAACATCCAACGTAGACTCCTGCTGACTGGCACTCCTATTCAGAACAGTTTGCAGGAATTGTGGTCCCTTCTTAATTTTCTCCTTCCAAGCATTTTTAACTCAGTTCAAAATTTTGAGGACTGGTTTAATGCTCCCTTTGCGGACCGAGTTGATGTCTCTCTAACAGATGAAGAGCAGCTATTGATCATTCGCCGTCTTCATCAAGTAATAAGGCCCTTCATATTAAGAAGGAAGAAAGATGAGGTGGAAAAATATCTTCCAGGCAAATCTCAGGTCATACTCAAATGTGATATGTCATCATGGCAGAAAGTATATTATCAACAAGTTACTGACTTGGGCAGAGTTGGCTTGGACAATGGCACTGGGAAATCCAAGAGTCTACAGAATTTAACCATGCAACTCAGAAAGTGCTGTAACCATCCTTACCTCTTTGTGGGAGAGCATAATATCTGGAATAAGGATGAGATTGTCCGAGCATCAGGGAAGTTTGAACTTCTTGACCGTTTGCTACCAAAACTTCGTAGAACTGGGCACAGAGTCCTCCTGTTCTCACAAATGACTCGTCTAATGGATATTCTTGAAATTTATCTGCGGCTTCATGATTACAAGTTTCTTAGATTAGATGGCTCAACAAAAACTGAGGAAAGGGGGACTCTACTGCGACAGTTCAATGCTCCTGACTCTCCATACTTCATGTTTCTTTTAAGCACCCGTGCTGGAGGCCTTGGTCTAAACTTGCAAACAGCAGATACTGTTATAATTTTTGATAGTGATTGGAACCCTCAAATGGATCAACAAGCTGAGGATCGAGCTCATCGCATTGGACAAAAGAAAGAAGTTAGGGTTTTTGTGCTGGTTAGTGTGGGATCAATTGAAGAGGTGATTTTGGAGCGTGCAAAACAAAAGATGGGCATTGATGCTAAGGTCATCCAGGCGGGACTTTTTAACACAACTTCAACAGCTCAGGACAGGAGAGAAATGTTGGAGGAGATTATGCGCAGAGGCACAAGCTCACTTGGGACTGATGTGCCTAGTGAGAGAGAAATCAACCGTCTTGCAGCTCGATCAGATGAAGAATTTTGGTTGTTTGAGAGAATGGATGAAGAGAGAAGGCAAAAGGAGAACTACAGAGCTCGTCTCATGGAAGAGCATGAAGTTCCAGATTGGGTATACGCTGCAACAGTTAGCAAGGACGAGAAGGTCAAAAGTTCTCATTTTGGTAGCGTTACTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCTGATACATTAAGTGATCTGCAGTGGATGAAAGCTGTGGAGAATGGGGAAGATGTGTCGAGGATTTCAGTTAAAGGGAGAAGAAGAGACCACCTACCATTGGACAGCAACACAATTGCCGGTGATAATGTTGGGGTAGAAGAAAGTTTTTCTGAAATACAAAATGAAAGCTTCTCCATGGCGAAAGAGAGATCAAGTGAAGACTCTTTCCATGGGACACCTGGTCCTGCCCCAAAGAGACTCAGGCAGGAAGGAATGAACACACAGAAACATGAAGACGAGGGCATCAGAGGAAGTGGTTTGAATGAGCATATGTTCTCCTGGAATACCCATAGAAAGAAAAGATCAAGCAGTCTTACTCAGAGCTCATCTTTTTCTGATTCTAGAGGGCAGAATTTTAATGGAAGAGCAAATTGGAGTTGA 3351 0.4279 MAQLQSPIDHAQKTKTLISALNLVSRNLPLPPDLFNTVSSIYHAAQDDDRELEGPDGSVGGAGSEEKQVDAHADLVLDNTGNSRENLLTDLEDALFKQRPSCVSGYKLKEERESRFKSQIQRRLNELEGLPSSRGEDLQTRCLLELYGLKLTELQRKVRSDVSAEYWLNVKCAYPDRQLFDWGMMRLRRPMYGVGDPFAMDADDQLRKKRDAERLSKLEEEEKNQIETRKRKFFAEILNAVREFQLQIQASLKRRKQRNDGIQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKLTDGIEPLEDSEAELPESDGSKNGISKESPNEEDADMVDSDHNGDTSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLIENKGVTGPHLIVAPKAVLPNWINEFSTWVPSITTVLYDGRLDERKAMKEEISGEGKFNVLITHYDLIMRDKAFLKKINWFYLIVDEGHRLKNHECALARTLDSGYNIQRRLLLTGTPIQNSLQELWSLLNFLLPSIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSSWQKVYYQQVTDLGRVGLDNGTGKSKSLQNLTMQLRKCCNHPYLFVGEHNIWNKDEIVRASGKFELLDRLLPKLRRTGHRVLLFSQMTRLMDILEIYLRLHDYKFLRLDGSTKTEERGTLLRQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFERMDEERRQKENYRARLMEEHEVPDWVYAATVSKDEKVKSSHFGSVTGKRKRKEVVYADTLSDLQWMKAVENGEDVSRISVKGRRRDHLPLDSNTIAGDNVGVEESFSEIQNESFSMAKERSSEDSFHGTPGPAPKRLRQEGMNTQKHEDEGIRGSGLNEHMFSWNTHRKKRSSSLTQSSSFSDSRGQNFNGRANWS 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g2126 1116 MobiDBLite consensus disorder prediction 355 377 - -
Mibi09g2126 1116 Pfam Snf2-ATP coupling, chromatin remodelling complex 920 986 IPR029295 GO:0042393
Mibi09g2126 1116 PANTHER SNF2/RAD54 HELICASE FAMILY 200 1038 - -
Mibi09g2126 1116 SMART helicmild6 747 831 IPR001650 -
Mibi09g2126 1116 MobiDBLite consensus disorder prediction 1029 1116 - -
Mibi09g2126 1116 Gene3D - 376 632 IPR038718 -
Mibi09g2126 1116 MobiDBLite consensus disorder prediction 1060 1075 - -
Mibi09g2126 1116 Pfam Helicase conserved C-terminal domain 718 831 IPR001650 -
Mibi09g2126 1116 CDD SF2_C_SNF 709 842 - -
Mibi09g2126 1116 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 384 633 IPR027417 -
Mibi09g2126 1116 Coils Coil 202 232 - -
Mibi09g2126 1116 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 721 888 IPR001650 -
Mibi09g2126 1116 SMART ultradead3 404 597 IPR014001 -
Mibi09g2126 1116 FunFam Chromatin structure-remodeling complex protein SYD 399 642 - -
Mibi09g2126 1116 Coils Coil 919 942 - -
Mibi09g2126 1116 SMART SnAC_2 924 986 IPR029295 GO:0042393
Mibi09g2126 1116 Pfam SNF2-related domain 411 699 IPR000330 GO:0005524|GO:0140658
Mibi09g2126 1116 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 420 586 IPR014001 -
Mibi09g2126 1116 MobiDBLite consensus disorder prediction 49 69 - -
Mibi09g2126 1116 Gene3D - 639 938 IPR027417 -
Mibi09g2126 1116 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 635 885 IPR027417 -
Mibi09g2126 1116 MobiDBLite consensus disorder prediction 325 378 - -
Mibi09g2126 1116 FunFam Probable ATP-dependent DNA helicase CHR12 639 937 - -
Mibi09g2126 1116 MobiDBLite consensus disorder prediction 1088 1116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g2126 Mibi-ChrMibi09 40565177 40574028 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g2126 390 858 RAD5 or RAD16-like Gene Family AT1G02670 26.157 6.35e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi09g2126 SNF2_N 6.1e-69 CL0023