Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g2029 ATGGCAGAGACTTGGAAATGTGTCAATGTTTGCTTGCTGGTGTTGGTAACTTTGTTCATTGGAGCCATGGCTAGAGTACAGATCTCTGAAATCAGGAATATTGGAGCACAGAAACTGGAAAGCTTAACCAACACTTCAATGGCGGCCAGGGCCAAACAGGCCGAGGAATTAAATGACCGTGCTGTGGCTGCTGATCCAGAGGAGGTTGTTTCCGATACTGTAATGACGTTTCAGAACAGCACTGAAAGAAGAAATTTGGGATTTTTCTCCTGTGGGACCGGCAATCCCATTGATGATTGCTGGCGTTGCGACCCCAACTGGCAACGTAACCGGAAGCGCCTCGCAGACTGCGGCATTGGATTTGGCAGGAATGCCATTGGTGGCCGTGACGGTCGCTTCTATGTCGTCACTGACTCTGGAGACGATGACCCGGTCAACCCAAAGCCCGGCACCCTGAGGCACGCAGTGATCCAGGACAGGCCACTCTGGATTGTATTCAAGCGTGACATGGTGATCCAATTGAAGCAGGAGCTCATTGTGAACAGCTTCAAGACCATCGATGGGCGAGGAGCAAATGTGCACATTGCTAATGGAGGCTGCATCACTATCCAGTTCGTGACAAATGTGATAATCCACGGACTTCACATCCATGACTGCAAACCCACAGGGAATGCCATGGTGAGAAGCTCCGAAACACACTATGGTTGGAGGACAATGGCCGACGGTGACGCCGTTTCCATATTTGGATCGAGCCACATTTGGGTCGACCACAATTCCCTCTCTCACTGCGCTGATGGCCTCGTCGACGCTGTCATGGGCTCTACCGCCATTACAATCTCCAACAACCACTTCACCCACCACAATGAGGTGATTCTGCTGGGCCACAGTGACTCTTACACAAGGGACAAGCAAATGCAAGTGACGATCGCTTACAACCATTTCGGAGAGGGACTCATCCAGAGGATGCCAAGGCACGGGTACTTCCACGTAGTGAACAATGACTACACACACTGGGAGATGTATGCGATTGGGGGGAGTGCAAGCCCCACCATCAACAGCCAGGGTAATAGATATAATGCTCCCCTCAACCCCTTCGCCAAGGAGGTGACCAAGCGAGTGGAGACCGCAGAAACCCAGTGGAAGGGATGGAATTGGAGGTCGGAGGGAGATCTCTTGCTCAACGGTGCTTATTTCACTCCTTCTGGCGCTGGAGCTTCAGCAAGCTATGCCAGAGCCTCAAGCTTAGGAGCCAAGTCCTCTTCCATGGTTGGCACCATGACATCCAATGCTGGTGCCCTTGGCTGCAAAAAAGGCCGTCAGTGCTAG 1326 0.5211 MAETWKCVNVCLLVLVTLFIGAMARVQISEIRNIGAQKLESLTNTSMAARAKQAEELNDRAVAADPEEVVSDTVMTFQNSTERRNLGFFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGRFYVVTDSGDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVHIANGGCITIQFVTNVIIHGLHIHDCKPTGNAMVRSSETHYGWRTMADGDAVSIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRHGYFHVVNNDYTHWEMYAIGGSASPTINSQGNRYNAPLNPFAKEVTKRVETAETQWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGTMTSNAGALGCKKGRQC 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g2029 441 Pfam Pectate lyase 175 356 IPR002022 -
Mibi09g2029 441 FunFam Pectate lyase 94 434 - -
Mibi09g2029 441 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Mibi09g2029 441 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Mibi09g2029 441 PRINTS Pollen allergen Amb family signature 341 360 IPR018082 -
Mibi09g2029 441 PRINTS Pollen allergen Amb family signature 383 407 IPR018082 -
Mibi09g2029 441 PRINTS Pollen allergen Amb family signature 412 435 IPR018082 -
Mibi09g2029 441 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Mibi09g2029 441 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Mibi09g2029 441 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Mibi09g2029 441 SMART amb_all 169 364 IPR002022 -
Mibi09g2029 441 SUPERFAMILY Pectin lyase-like 79 435 IPR011050 -
Mibi09g2029 441 Gene3D - 94 434 IPR012334 -
Mibi09g2029 441 PANTHER PECTATE LYASE 18-RELATED 60 439 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g2029 Mibi-ChrMibi09 39593739 39597336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g2029 27 441 Polysaccharide Lyase AT4G13710 78.436 0.0 703