Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g1980 ATGGATTCTCTTTCACCATTTCTAGACCTCAATGATTTACCCGACCCATCCGCCTTTATGCCCAGTGGAAGCACCAACCCCATCATCAATGTCACCCCCACGCCGTTATTAGTTCCGAAATTGGAACCCAAGCTCGAGCCATTAGACGAGCCATGTCTGAATCATCGCCCACAAGAACCCCAAGAAGTGGAACGAACCATGTTTTCAAATCACGCCTTGGACGCTCTCTCTCCATCTCAGCGCAACAATTTCTGTGACAACACCCTCGCTTCCTCCGTTGAAACCCGAGCCTCATCAACGGAGCCTGATTTGTACGCAGATTTTTATCGATTCTCCGAGGAGTTCAGGAAAATGTTAGCTGAGAGGTTGTCAAACACAAAGGGAGATGTAGATGTCAACGGTTTAGGCCCAGATTCGCGGGCAATTGTTCCTGTGGTAGAGGAAAATCAAAATCAGGCTTCTCCTGTCGTCGTTACTCCTCGGCGGGCCCCACGGGTGAAGGAACTGGTAAGGGTGAATGATCTTAGAATTGAAGATGATAGGTATTTCCGTGACATTATTAGAAAGACCAGGATGATTTATGATTCGTTGCGTGTGTTGTCGACGGTGGAGGAGGATGAGAAAAAGTTCGATTTAGTTTGTGCTAAAAGGATTCGTGGTGATTTAAAGGCTGCCTCTTTAATGAGGGATCGTGGGTTGTGGCTTAATCGTGATAAGCGTATAGTGGGTGCGATTCCTGGGATTTACATTGGTGATTTGTTCTTTTTTAGGATGGAACTTGTTGTGGTTGGCCTGCACGGTCAACCACAAGCTGGGATTGATTATCTTCCTTCTAGCCAGAGCACAAATGGGGAGTCTATAGCAACTAGTGTGATAGTTTCTGGTGGGTATGAGGATGATGAGGACAGTGGGGATGTGATAATCTACACGGGTCATGGAGGTCAAGGTAAGAATATTACAAGGCAAGTGGTTCATCAGAAGTTGGAAGGAGGGAATCGTGCTATGGAAAGAAGCATGCATTATGGGATTGAAGTGCGTGTGATTCGTGGGTTTAAATATGAGGGAAGTGTTTCTAGTAAAATTTACGTTTATGATGGCTTGTATAGGATTGTACAATGCTGGTTTGATGTGGGTAAATCTGGATTTGGAGTTTATAAGTATAAACTTGTTAGAATTGAGGGCCAACCTCAAATGGGTAGTGCTATTCTTAAAATTGCTCAGACTCTTAGGACTCGTCCTTTGTGTATCAGTCCAATGGCTTATCTCAGTCTTGATATTTCTAACCAAAGGGAGATGATTCCTGTTCGTCTTTTTAATGACATAGATAAGGATCATGAGCCTCTTTGTTACGAATATCTTTCACGGACGAATTTCCCACCATTTGTATTTCATCAAAGTGGGAATGCTACTGGCTGTGACTGCGTTGATGGTTGTGCTGATAACTGCTTTTGTGCCTTGAAAAATGGTGGCCAATTCCCTTATAATCTAAACGGGATTCTTGTGAGAGGGAAGCCTGTAATTTTTGAATGTGGCCCTTTCTGTCGCTGTCCTCCACATTGCCGGAATCGGGTTACACAACATGGGCTTAAAAATAGAATGGAAGTGTTTAGGTCAAGGGAAACAGGCTGGGGAGTGAGGTCATTGGACCTTATTCACGCCGGTGCTTTTATATGTGAATATGCTGGGGTTGTTCTGACTATGGAGCAAGCAAAGATTCTGTCAATGAATGGTGATTCATTGATATATCCGAGTCGGTTTTCTAATAAGCAAGGCACAGAATGGGGTGATTTATCTCAGATTTACTCTGATTACGTGCGTCCATCGTATCCATCAATTCCTCCTTTAGATTTTGCGATGGACGTGTCCACAATGAGGAATGTTGCTTGCTATATTAGCCACAGTTCACTTCCTAATGTGTCGGTTCAGTTTGTGCTGTATGATCACAATAATTTGATGTTCCCGCACCTTATGCTATTTGCATTGGAGAACATCCCTCCGATGAGGGAGCTGAGCCTTGATTATGGGGTGGCTGATGAATGGACAGGGAAGCTTTCCATATGTAACTGA 2067 0.4403 MDSLSPFLDLNDLPDPSAFMPSGSTNPIINVTPTPLLVPKLEPKLEPLDEPCLNHRPQEPQEVERTMFSNHALDALSPSQRNNFCDNTLASSVETRASSTEPDLYADFYRFSEEFRKMLAERLSNTKGDVDVNGLGPDSRAIVPVVEENQNQASPVVVTPRRAPRVKELVRVNDLRIEDDRYFRDIIRKTRMIYDSLRVLSTVEEDEKKFDLVCAKRIRGDLKAASLMRDRGLWLNRDKRIVGAIPGIYIGDLFFFRMELVVVGLHGQPQAGIDYLPSSQSTNGESIATSVIVSGGYEDDEDSGDVIIYTGHGGQGKNITRQVVHQKLEGGNRAMERSMHYGIEVRVIRGFKYEGSVSSKIYVYDGLYRIVQCWFDVGKSGFGVYKYKLVRIEGQPQMGSAILKIAQTLRTRPLCISPMAYLSLDISNQREMIPVRLFNDIDKDHEPLCYEYLSRTNFPPFVFHQSGNATGCDCVDGCADNCFCALKNGGQFPYNLNGILVRGKPVIFECGPFCRCPPHCRNRVTQHGLKNRMEVFRSRETGWGVRSLDLIHAGAFICEYAGVVLTMEQAKILSMNGDSLIYPSRFSNKQGTEWGDLSQIYSDYVRPSYPSIPPLDFAMDVSTMRNVACYISHSSLPNVSVQFVLYDHNNLMFPHLMLFALENIPPMRELSLDYGVADEWTGKLSICN 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g1980 688 Pfam Pre-SET motif 426 523 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mibi09g1980 688 SUPERFAMILY PUA domain-like 224 405 IPR015947 -
Mibi09g1980 688 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 63 688 IPR025794 GO:0016571
Mibi09g1980 688 SMART preset_2 423 515 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mibi09g1980 688 ProSiteProfiles PUA domain profile. 334 352 - -
Mibi09g1980 688 Gene3D - 240 399 IPR036987 -
Mibi09g1980 688 ProSiteProfiles YDG domain profile. 243 391 IPR003105 -
Mibi09g1980 688 Gene3D SET domain 400 688 IPR046341 -
Mibi09g1980 688 Pfam SET domain 542 675 IPR001214 GO:0005515
Mibi09g1980 688 ProSiteProfiles SET domain profile. 531 675 IPR001214 GO:0005515
Mibi09g1980 688 SMART set_7 531 681 IPR001214 GO:0005515
Mibi09g1980 688 SMART G9a_1 238 395 IPR003105 -
Mibi09g1980 688 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 146 676 - -
Mibi09g1980 688 ProSiteProfiles Pre-SET domain profile. 470 528 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mibi09g1980 688 SUPERFAMILY SET domain 413 687 IPR046341 -
Mibi09g1980 688 Pfam SAD/SRA domain 242 395 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g1980 Mibi-ChrMibi09 39063753 39065819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g1980 161 677 Su(var)3-9 homologs AT5G04940 39.366 9.15e-109 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mibi09g1980 SAD_SRA 4e-48 CL0178