Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g1964 ATGGCAGCTTCTGCAGCTGCGGCTATAGGCTCATCATTCTCTTCCTCCATCAACACTCTCAAATGCCTTCGTTCATCCAAGAACTTATCCTCTGAACCCCTTCTCAGAATTTCATCAAATCGTGTTTTATCCTCATCTTTGTCATCATCCCACTTGGTGGAACCACTTTCCTTCGATACCAATGTCAATAAATTGTGGGTTTCAAGGGTTTCTGCTCAGGAAGAGCTTGTAGTGGCTGATGGTATTGATGCTGGTTTAGGTAAAGAGAATGAGCAGAATGAGGAGGAGGGAGAAAAGGAAGTCGTAGAAGAAGGAGAGGCTGAAGATGTCTCTGTTCACACTAAACTTTATTTTGGGAACTTGCCTTACAGTGTTGATAGTGCACAACTTGCTGCTATTATACAGGATTATGGCAGCCCAGAACTCATTGAGGTTCTTTACAATAGAGAGACTGGAAAAAGCAGAGGTTTTGCATTTGTTACAATGAGTAGTGTCGAAGATTGCAATGCAGTGATTGAAAACCTTGATGGAATTGAATACTTGGGACGAACCCTGCGAGTAAACTTCTCTGACAAACCTAAACCGAAAGAACCATTGTACCCTGAAACTGAACATAAGCTTTTTGTTGGGAACTTGTCATGGTCTGTAACATCTGAGAGCCTGACAGAAGCGTTTCAACAATATGGACATGTGGTTGGAGCTAGGGTCTTGTATGATGGTGAAACAGGAAGATCCCGTGGTTATGGCTTTGTTTGCTATTCAACCAAATCAGAAATGGAAACTGCCCTTTCATCCATGAATGGAGTGGAATTGGAAGGACGAGCAGTGCGTGTAAGCTTGGCTGAAGGGAAACGATCACAGAGTTAA 867 0.4291 MAASAAAAIGSSFSSSINTLKCLRSSKNLSSEPLLRISSNRVLSSSLSSSHLVEPLSFDTNVNKLWVSRVSAQEELVVADGIDAGLGKENEQNEEEGEKEVVEEGEAEDVSVHTKLYFGNLPYSVDSAQLAAIIQDYGSPELIEVLYNRETGKSRGFAFVTMSSVEDCNAVIENLDGIEYLGRTLRVNFSDKPKPKEPLYPETEHKLFVGNLSWSVTSESLTEAFQQYGHVVGARVLYDGETGRSRGYGFVCYSTKSEMETALSSMNGVELEGRAVRVSLAEGKRSQS 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g1964 288 FunFam 31 kDa ribonucleoprotein, chloroplastic 72 195 - -
Mibi09g1964 288 SUPERFAMILY RNA-binding domain, RBD 200 285 IPR035979 GO:0003676
Mibi09g1964 288 Gene3D - 196 288 IPR012677 -
Mibi09g1964 288 FunFam 28 kDa ribonucleoprotein, chloroplastic 196 287 - -
Mibi09g1964 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 192 IPR000504 GO:0003723
Mibi09g1964 288 Coils Coil 88 108 - -
Mibi09g1964 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 276 IPR000504 GO:0003723
Mibi09g1964 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 186 IPR000504 GO:0003723
Mibi09g1964 288 Gene3D - 72 195 IPR012677 -
Mibi09g1964 288 PANTHER OS02G0815200 PROTEIN 36 285 - -
Mibi09g1964 288 SUPERFAMILY RNA-binding domain, RBD 113 197 IPR035979 GO:0003676
Mibi09g1964 288 MobiDBLite consensus disorder prediction 85 105 - -
Mibi09g1964 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 283 IPR000504 GO:0003723
Mibi09g1964 288 SMART rrm1_1 206 279 IPR000504 GO:0003723
Mibi09g1964 288 SMART rrm1_1 115 188 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g1964 Mibi-ChrMibi09 38860880 38862552 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g1964 114 284 Eukaryotic Initiation Factors Gene Family AT3G16380 31.720 8.02e-19 84.3