Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g1948 ATGGATTCGGATCAAGGTAAGCTTTTTATTGGTGGGATATCGTGGGATACGACGGAGGACAAGCTGAAAGATCATTTCAGCAACTACGGTGATGTTTTGCACACCTCGGTCATGAGAGAGAAGAACACTGGCAAGCCCCGAGGCTTTGGATTCGTTGTTTTCGCAGATCCTTCCATTCTCGATAGGGTTCTCGAGGAACAGCACGTCATCGACGGAAGAACGGTTGATGCCAAGAAGGCCCTCTCCAGAGAGGATCAACAAAATTCTGCCCCTTCCAGGGCTGGAAATCCCAACTCCTACAGAAATTCCGGAAATGGTGGAAATATCAGAACCAAAAAAATATTTGTTGGAGGGCTGCCCCCTACATTGACTGAAGAAAAGTTTCGTGAGTATTTTGAGGATTATGGTCATGTTACTGATGTAGTCGTCATGTATGACCAGAATACCGGGCGTCCACGTGGATTTGGGTTTATTTCATTTGACACTGAAGATGCAGTTGACAGGGTTTTGCACAAGCCGTTTCATGATTTAAATGGAAAGCAAGTAGAAGTGAAGCGCGCACTTCCAAAGGATGCTAATCCTGGTTCAAGTGGTCGTATGGGTGGTGCAGGGGGAGGTGGCAGTGGTTATCAGGGGTACGGGGCATCTGGCGGCGATCAAAATGCATATGATGGTCGGATGGATTCTGGTAGGTATGGGCAGCCCCCAAGCAGTGGGGGTGGATTTCCACCTTATGGTTCTTCTGGATATAGTGCTCCTGGGTATGGTTATGGACCTGCTAATAATGGCATGGGTTATGCCGGATATGGAAGCTTTGGTGGAGCAAGCACTGGGTATGGTGGACCTGCTGGTGTGACTTATGGGAATCCCAACATCCCTAATGCTGCTTATGCTGGTGGCCCACCCGGTGGCCCAAGGAGTTCGTGGCCTGCTCAAGCTCCCTCTGGTTATGGCTCTATGGGCTATGGTAGTACTGCTGCTTGGGGTGCTGCAGGTGGCGGTGCTGGACCTGGTGGTGGCAGCTCAGCACCTGCAGGTCAATCACCCAGTGGAGCTGCTGGTTATGGGAATCAAGGATATGGTTATGGTGGGTATGGTGGTTATGGTGGAGGTGATAGTTCTTATGGGAACCCTGGCGTATATGGTGCTGTTGGTGGGCGTGGGGGAAGTGCCCCAAACAGCTATGCTAGTGGTCAAGGTGGAAACGAATCACAAGGTAGTGGTGGCAACTACAATGGAAGTGGCTATGGTGATGCAAATGGAAGTTCAGGATATGGAAATGCTGCCTGGAGATCTGAACCTGCTCAACAATCTGGAAATTATGGGACTTCTCAGGTAAGTGGAACTCATGGTGGGCAAGTTGGTTATGGCAGCGGCTATGGTGGTTCACAGTCACGGCAGGCCCAGCAGCAGTAA 1416 0.5035 MDSDQGKLFIGGISWDTTEDKLKDHFSNYGDVLHTSVMREKNTGKPRGFGFVVFADPSILDRVLEEQHVIDGRTVDAKKALSREDQQNSAPSRAGNPNSYRNSGNGGNIRTKKIFVGGLPPTLTEEKFREYFEDYGHVTDVVVMYDQNTGRPRGFGFISFDTEDAVDRVLHKPFHDLNGKQVEVKRALPKDANPGSSGRMGGAGGGGSGYQGYGASGGDQNAYDGRMDSGRYGQPPSSGGGFPPYGSSGYSAPGYGYGPANNGMGYAGYGSFGGASTGYGGPAGVTYGNPNIPNAAYAGGPPGGPRSSWPAQAPSGYGSMGYGSTAAWGAAGGGAGPGGGSSAPAGQSPSGAAGYGNQGYGYGGYGGYGGGDSSYGNPGVYGAVGGRGGSAPNSYASGQGGNESQGSGGNYNGSGYGDANGSSGYGNAAWRSEPAQQSGNYGTSQVSGTHGGQVGYGSGYGGSQSRQAQQQ 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g1948 471 MobiDBLite consensus disorder prediction 392 471 - -
Mibi09g1948 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Mibi09g1948 471 FunFam heterogeneous nuclear ribonucleoprotein 1 106 226 - -
Mibi09g1948 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Mibi09g1948 471 SUPERFAMILY RNA-binding domain, RBD 111 219 IPR035979 GO:0003676
Mibi09g1948 471 MobiDBLite consensus disorder prediction 186 245 - -
Mibi09g1948 471 MobiDBLite consensus disorder prediction 77 113 - -
Mibi09g1948 471 Gene3D - 4 88 IPR012677 -
Mibi09g1948 471 MobiDBLite consensus disorder prediction 333 353 - -
Mibi09g1948 471 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Mibi09g1948 471 MobiDBLite consensus disorder prediction 376 471 - -
Mibi09g1948 471 Gene3D - 108 235 IPR012677 -
Mibi09g1948 471 CDD RRM2_DAZAP1 110 189 IPR034131 GO:0003723
Mibi09g1948 471 MobiDBLite consensus disorder prediction 84 109 - -
Mibi09g1948 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Mibi09g1948 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 73 IPR000504 GO:0003723
Mibi09g1948 471 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Mibi09g1948 471 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
Mibi09g1948 471 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 471 - -
Mibi09g1948 471 SMART rrm1_1 113 185 IPR000504 GO:0003723
Mibi09g1948 471 SMART rrm1_1 7 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g1948 Mibi-ChrMibi09 38729201 38731268 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g1948 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 24.519 1.54e-09 58.5