Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g1911 ATGCAATTGAGGGTAGGAACTGGAGATATTTTTCGTCTTAGTGCGTCGAGTGCATCATCTGGAATAGATGACATAGAATCGCTTGGAGATGTTTTTGTATGGGGAGAGGTTTGGGCAGATGGGGTTTCATCTGATGGATTGGGGAATCCGGTCCCGGTGAAGACAGATGTCTTGATTCCCAAGTCATTAGAGTCCAATGTTGTTCTTGATGTTCAACAGATTGCATCTGGTGTCCGCCATACTGCTCTAGTTACAAGGCAAGGAGAGCTTTTTACTTGGGGAGAAGAATGTGGGGGAAGACTTGGTCATGGAATTGATAAAGACTTAAGCCACCCTTGTCTGATTGAATTCCTGGCAGCCACTAACGTTGAATATGTTGTATGTGGAGAATATCATACATGCGCTGTATCTACATCCGGTGATTTATTCTCTTGGGGTGATGGTACCCACCATGCTGGACTTCTTGGTCATGGAACTGACATTAGCCACTGGGTACCAAAGAGGATCATAGGCCCTTTAGAGGGACTTGAAGTTTTATCTGTTGCTTGTGGCACATGGCATTCGGCATTGGCAACTTCCAATGGGAAATTATTTACCTTCGGTGATGGAGCATTTGGTGTCTTGGGCCATGGAGATATGGAGAGTGTGTCATATCCAAAGGAGGTGCAATCATTGAGCGGACTAAAGACCATTAAGGTTGCATGTGGAGTATGGCATACCGCAGCTATTGTAGAGGTTATGGGCCAAACTGGTTTAAATGTCTCACCGAGGAAGCTCTTTACTTGGGGTGATGGTGACAAATATCGTTTGGGTCATGGTAACAAGGAAACTTACCTCCAACCCACCTGTGTCTCTGCACTCATTGAATACAATTTTCAACACGTAGCATGTGGGCACATTTTGACAGTCGCCCTCACTACAATGGGTCAAGTCTTCACTATGGGGGGCACTGCATATGGTCAACTAGGGAATCCTCTCTCTGACGGAAAATCACCTATCATGGTACAAGATAAGTTGGTTGGTGAATTTGTAGAGGAAATAGCATGCGGAGAACATCATGTTGCTGCCTTGACGTCAAGAAGTGAACTATATACTTGGGGGAAAGGTGCCAATGGAAGATTGGGGCATGGAGACACACATGATCGGAAATCTCCAACATTGGTTGAAGGCTTGAAAGATAGGCATGTAAGAAGTATCTCATGTGGCTCAAACTTTATGTCTTGTATTTGCATTCATAAATGGGTCTCCGGAGTTGACCAATCTGTTTGCTCTGGTTGCCGGCAAGCATTTGGTTTTACTAGAAAAAGGCACAACTGTTATCATTGTGGATTGGTGCATTGTCATTCATGTAGCTCTAAGAAGGCATTGAAAGCATCATTAGCTCCAACACCCGGAAAACCACATCGTGTCTGTGATGCATGTTATGCAAAACTTAAAACTGCTGAGATTGGCTATGGTTCCAGTTTTAGCCGAGGAACTACCCCTCCACGTAGATCAATAGATAATAGAGAAAGAATAGAATGGGTAGAGGCAAAGTCTTCAAGAGTTCTCTTTTCTCCCATTACAGAACCTGTAAAATCCCTTGAGATAAGGACTAATAACCTAGGAACTAGATCTGATTCCTCCTCCTTAGTCCGAGCTTCTCAAGTTCCATCACGTTTACAGTTAAATGATATTGCATTTCCAAGTTCACTGAGCACAATTCAGAATGCTCTCAAGCCTGTTGTTATACCTCCTAGTCCACCACGAACCCCACCTGCCAATTCTCGATCTTCATCACCATGTGCAAGAAGACTCAGCTCACCACATTCAACCGCCCCTGGATTTTCTAAAAGTATTATAGATAGTTTGAGGAAGACCAATGAGATTTTGAACGAAGAAGTCTCGAAAATGCATAAACAAATTCGAAGTTTGAAGCAGAAGAACGAAACACAAGATAAGGAGATAAAAAAGCTTCGGAAAAATGTTGATGAAGCCACCTCATTGGCCGGAAAGAAATATTCCAAGCATCAAGTAGCAAATGAATTTATCAAGTCCATAAAAGATCAGCTGAAGGAAATGATCAACAAGCTGCCACCAGAGGCTTCTCACTGTAAAAGCTTGAAAATTATGCTCGACCATGCAGAAGATTTTCTAAGAAAAATTGCAGAATCTGAAACCTCTACCTCTTTACCATCAAACTTAGAGTCTGGTCAACTAAATGCAACTACTGATGTAAATGCTTCAGATGGCGACACTGTTAAACCACAAGAACAAAAAGTGGAGGACAATGAAGATGCTGCAGGAGTCGATTCATCTCAAGATGGTAGAAAAGTTCAAGAAAGCAATGGGTCATCTACTTCTACTGGAGGAGCAGCAGTGCCTCCACAAATTTCAGAACATGGCTCAAGCTCACTGAACCCTTCAAGACCCAGGAAAGGAGGAGAAAACGAAACCATAGAACAATTTGCACCCGGTGTGTACGTGACACTCATAGTGCGGCCCGGTGGTAATAAAATTTTTAAACGAGTTAGATTCAGTAAGGGGAGGTTTGATGAACAACAGGCAGAAGAATGGTGGAGAAAAAACAAGGATGAGGTGCTTAGGAAATATAGTCCATCGGCAACAAATTATGCGGCTACAGGGACATCTAGCACTCGCAATCCTCTACCACCACCTCCTCCGCCTGCAGAAGAGAACGTTGAGTCTTCACCACCCTAA 2700 0.4333 MQLRVGTGDIFRLSASSASSGIDDIESLGDVFVWGEVWADGVSSDGLGNPVPVKTDVLIPKSLESNVVLDVQQIASGVRHTALVTRQGELFTWGEECGGRLGHGIDKDLSHPCLIEFLAATNVEYVVCGEYHTCAVSTSGDLFSWGDGTHHAGLLGHGTDISHWVPKRIIGPLEGLEVLSVACGTWHSALATSNGKLFTFGDGAFGVLGHGDMESVSYPKEVQSLSGLKTIKVACGVWHTAAIVEVMGQTGLNVSPRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIEYNFQHVACGHILTVALTTMGQVFTMGGTAYGQLGNPLSDGKSPIMVQDKLVGEFVEEIACGEHHVAALTSRSELYTWGKGANGRLGHGDTHDRKSPTLVEGLKDRHVRSISCGSNFMSCICIHKWVSGVDQSVCSGCRQAFGFTRKRHNCYHCGLVHCHSCSSKKALKASLAPTPGKPHRVCDACYAKLKTAEIGYGSSFSRGTTPPRRSIDNRERIEWVEAKSSRVLFSPITEPVKSLEIRTNNLGTRSDSSSLVRASQVPSRLQLNDIAFPSSLSTIQNALKPVVIPPSPPRTPPANSRSSSPCARRLSSPHSTAPGFSKSIIDSLRKTNEILNEEVSKMHKQIRSLKQKNETQDKEIKKLRKNVDEATSLAGKKYSKHQVANEFIKSIKDQLKEMINKLPPEASHCKSLKIMLDHAEDFLRKIAESETSTSLPSNLESGQLNATTDVNASDGDTVKPQEQKVEDNEDAAGVDSSQDGRKVQESNGSSTSTGGAAVPPQISEHGSSSLNPSRPRKGGENETIEQFAPGVYVTLIVRPGGNKIFKRVRFSKGRFDEQQAEEWWRKNKDEVLRKYSPSATNYAATGTSSTRNPLPPPPPPAEENVESSPP 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g1911 899 Pfam Transcription factor regulating root and shoot growth via Pin3 809 864 IPR013591 -
Mibi09g1911 899 MobiDBLite consensus disorder prediction 576 610 - -
Mibi09g1911 899 SUPERFAMILY RCC1/BLIP-II 29 414 IPR009091 -
Mibi09g1911 899 CDD FYVE_like_SF 423 475 - -
Mibi09g1911 899 FunFam PH, RCC1 and FYVE domains-containing protein 1 4 248 - -
Mibi09g1911 899 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 74 84 IPR000408 -
Mibi09g1911 899 SMART fyve_4 411 480 IPR000306 GO:0046872
Mibi09g1911 899 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 29 87 IPR000408 -
Mibi09g1911 899 MobiDBLite consensus disorder prediction 880 899 - -
Mibi09g1911 899 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 257 308 IPR000408 -
Mibi09g1911 899 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 309 360 IPR000408 -
Mibi09g1911 899 MobiDBLite consensus disorder prediction 589 610 - -
Mibi09g1911 899 MobiDBLite consensus disorder prediction 768 805 - -
Mibi09g1911 899 Pfam Transcription factor BRX N-terminal domain 668 699 IPR027988 -
Mibi09g1911 899 MobiDBLite consensus disorder prediction 719 812 - -
Mibi09g1911 899 PRINTS Chromosome condensation regulator RCC1 signature 197 211 IPR000408 -
Mibi09g1911 899 PRINTS Chromosome condensation regulator RCC1 signature 1 13 IPR000408 -
Mibi09g1911 899 PRINTS Chromosome condensation regulator RCC1 signature 140 156 IPR000408 -
Mibi09g1911 899 PRINTS Chromosome condensation regulator RCC1 signature 298 316 IPR000408 -
Mibi09g1911 899 PRINTS Chromosome condensation regulator RCC1 signature 181 197 IPR000408 -
Mibi09g1911 899 PRINTS Chromosome condensation regulator RCC1 signature 356 377 IPR000408 -
Mibi09g1911 899 SUPERFAMILY FYVE/PHD zinc finger 413 480 IPR011011 -
Mibi09g1911 899 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 417 479 IPR017455 -
Mibi09g1911 899 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 361 412 IPR000408 -
Mibi09g1911 899 Pfam FYVE zinc finger 413 479 IPR000306 GO:0046872
Mibi09g1911 899 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 195 246 IPR000408 -
Mibi09g1911 899 MobiDBLite consensus disorder prediction 719 747 - -
Mibi09g1911 899 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 140 194 IPR000408 -
Mibi09g1911 899 Coils Coil 614 662 - -
Mibi09g1911 899 MobiDBLite consensus disorder prediction 865 899 - -
Mibi09g1911 899 ProSiteProfiles BRX domain profile. 810 865 IPR013591 -
Mibi09g1911 899 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 419 485 IPR013083 -
Mibi09g1911 899 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 88 139 IPR000408 -
Mibi09g1911 899 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 21 689 - -
Mibi09g1911 899 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 233 243 IPR000408 -
Mibi09g1911 899 Gene3D - 151 247 IPR009091 -
Mibi09g1911 899 Gene3D - 13 150 IPR009091 -
Mibi09g1911 899 MobiDBLite consensus disorder prediction 748 765 - -
Mibi09g1911 899 Pfam Regulator of chromosome condensation (RCC1) repeat 88 136 IPR000408 -
Mibi09g1911 899 Pfam Regulator of chromosome condensation (RCC1) repeat 194 243 IPR000408 -
Mibi09g1911 899 Pfam Regulator of chromosome condensation (RCC1) repeat 309 357 IPR000408 -
Mibi09g1911 899 Pfam Regulator of chromosome condensation (RCC1) repeat 259 305 IPR000408 -
Mibi09g1911 899 Pfam Regulator of chromosome condensation (RCC1) repeat 362 408 IPR000408 -
Mibi09g1911 899 Pfam Regulator of chromosome condensation (RCC1) repeat 139 190 IPR000408 -
Mibi09g1911 899 Gene3D - 248 418 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g1911 Mibi-ChrMibi09 38325501 38329786 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g1911 808 876 Major Intrinsic Protein MIP AT1G31880 37.681 1.10e-08 56.2