LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi09g1891	ATGGATGGGCACAAGGGAAAGCAAGAGAAGGCGAAGGACGAGGCGAGGTACCGAGGCGTGAGGAGGCGGCCGTGGGGGAAGTACGCGGCGGAGATTAGGGATCCGACGAAGCAAGGGGCGAGGCTGTGGCTGGGGACGTTTGATACGGCGGAGGAAGCAGCCAGAGCCTATGATAAGGCAGCTTTCAACATGAGGGGTCATCTTGCAATCCTTAATTTCCCTAATGAGTATTATTCTCAGCTTAGGCCACCACCTAATTATGCTCCCTTTTTTATGCCTACTACAACTACTTTGTCTTCTCCATATGGTCATGGAGGTGCAGGAGGCTCATCATCCACGCGAAAGCAAGTTTTTGAGTTTGAGTATCTGGATAATCAGGTGCTTGAAGACCTGCTTGAATCAGAAGAGGAGAAAAAGAAAAGGATGTGA	429	0.5035	MDGHKGKQEKAKDEARYRGVRRRPWGKYAAEIRDPTKQGARLWLGTFDTAEEAARAYDKAAFNMRGHLAILNFPNEYYSQLRPPPNYAPFFMPTTTTLSSPYGHGGAGGSSSTRKQVFEFEYLDNQVLEDLLESEEEKKKRM	142

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi09g1891	142	Gene3D	AP2/ERF domain	15	75	IPR036955	GO:0003700\|GO:0006355
	Mibi09g1891	142	Coils	Coil	125	142	-	-
	Mibi09g1891	142	CDD	AP2	15	75	IPR001471	GO:0003700\|GO:0006355
	Mibi09g1891	142	PANTHER	DNA-BINDING DOMAIN	8	136	IPR044808	GO:0003700\|GO:0009873
	Mibi09g1891	142	PRINTS	Ethylene responsive element binding protein signature	17	28	IPR001471	GO:0003700\|GO:0006355
	Mibi09g1891	142	PRINTS	Ethylene responsive element binding protein signature	40	56	IPR001471	GO:0003700\|GO:0006355
	Mibi09g1891	142	SUPERFAMILY	DNA-binding domain	16	75	IPR016177	GO:0003677
	Mibi09g1891	142	SMART	rav1_2	16	80	IPR001471	GO:0003700\|GO:0006355
	Mibi09g1891	142	FunFam	Ethylene-responsive transcription factor 2	15	75	-	-
	Mibi09g1891	142	ProSiteProfiles	AP2/ERF domain profile.	16	74	IPR001471	GO:0003700\|GO:0006355
	Mibi09g1891	142	Pfam	AP2 domain	16	67	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi09g1891	Mibi-ChrMibi09	38017629	38018057	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi09g1891	14	139	AP2-EREBP Transcription Factor Family	AT3G23230	63.359	5.24e-50	154

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Mibi09g1891		AP2	1.1e-16	CL0081