Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g1887 ATGGATCTTCTTGCAGGAAGAAGATTCTTGATTTCTGGGTCACAACCCCTTTCACCATTACCAACCCCAGTAAGTTCAATCCTTCACCCACATTCACATTCTGGAAACACCAGCTTCCCCATCATAGCCATCGCCATAATAGGAATATTAGCCACAGCTTTCTTGCTAGTTAGTTACTACATCTTCGTCATCAAATGTTGCCTCAATTGGCACCGCATAGATCTCCTTCGCCGCTTCTCTCCTTCCCGCCGGCGAGATGAGCCGCCGATGGCGGCATATTCACCGCCGGGAACGGAGGCTCGAGGACTCAACGAGGCGATGATCCGATTGATACCAGTCATTCATTACAAAACAGAGGAAAACAGAGCATTAGGAGAGAGAAGTTTCACAGAATGTTCTGTTTGCTTGAACGAGTTTCATGAGAAGGAGAAGCTAAGGATTATACCAAATTGTAGCCATGTGTTTCACATAGATTGCATCGATGTTTGGCTTCAGAATAATGCGAATTGCCCACTTTGTAGAACTAGTATTTCTCTCTCGAGCAGATTCCAAATCGATCAGATTCTGAGTTCCAGATTGTCCCCTCAAGATGGGTATGGTGAAAATCTCAATGGTGGGGACGAAGATTTTGTTGTGATTGAGCTCAGCAATAATGGTACAGAGGAGAGAGAAAACACACCAAGAGAAATGGTGAGTCCTTCGCCTAAGAAAAAACCATGGAAGCTTCAGAAAGTGACGAGCATGGGAGATGAATGCATTGATATTAGAGGTAAAGATGAGAAATTTTCAGTGCAGCCTATAAGGAGATCGTTCTCAATGGATTCTTCAGGGGATAGACAATTGTACATGGCAGTTCAAGAAGCTTTGAAGAAACAGAAGAGGCAAGAAGTGAGTGAGATATCATCGTCTTCCATTGAAGGTGGTAGTAGTAGTGGTAATAATGTTAGTGGTAGAGTCAAGAGGTCATTTTTTTCCTTTGGACATAATAGCAGTAGATCCAGAAGTTCAGTCCTACCTGTTTCTGTGGACCACTAG 1035 0.4357 MDLLAGRRFLISGSQPLSPLPTPVSSILHPHSHSGNTSFPIIAIAIIGILATAFLLVSYYIFVIKCCLNWHRIDLLRRFSPSRRRDEPPMAAYSPPGTEARGLNEAMIRLIPVIHYKTEENRALGERSFTECSVCLNEFHEKEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLSSRFQIDQILSSRLSPQDGYGENLNGGDEDFVVIELSNNGTEERENTPREMVSPSPKKKPWKLQKVTSMGDECIDIRGKDEKFSVQPIRRSFSMDSSGDRQLYMAVQEALKKQKRQEVSEISSSSIEGGSSSGNNVSGRVKRSFFSFGHNSSRSRSSVLPVSVDH 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g1887 344 CDD RING-H2_PA-TM-RING 131 174 - -
Mibi09g1887 344 SMART ring_2 132 173 IPR001841 -
Mibi09g1887 344 MobiDBLite consensus disorder prediction 218 240 - -
Mibi09g1887 344 MobiDBLite consensus disorder prediction 221 235 - -
Mibi09g1887 344 MobiDBLite consensus disorder prediction 293 318 - -
Mibi09g1887 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 179 IPR013083 -
Mibi09g1887 344 SUPERFAMILY RING/U-box 131 180 - -
Mibi09g1887 344 FunFam E3 ubiquitin-protein ligase ATL6 93 180 - -
Mibi09g1887 344 MobiDBLite consensus disorder prediction 298 318 - -
Mibi09g1887 344 ProSiteProfiles Zinc finger RING-type profile. 132 174 IPR001841 -
Mibi09g1887 344 PANTHER RING-H2 FINGER PROTEIN ATL16 23 340 IPR044600 GO:0016567|GO:0016740
Mibi09g1887 344 MobiDBLite consensus disorder prediction 325 344 - -
Mibi09g1887 344 Pfam Ring finger domain 131 174 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g1887 Mibi-ChrMibi09 37971950 37972984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g1887 28 343 C3H Transcription Factor Family AT1G04360 50.829 1.89e-99 297