Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g1765 ATGGAATTGGATGACTGGGACTTGAGTGCTGAGGATCTTGATTCTCTCGAAAAAGATGCTTTCCAAAAGATTGCTCAACTACGCAACTCAGTCTCTTCCTCTGCCTCTGTTTCTTCTTCTTCAACTTCTTCCAACACTCATCGATTCAATGTACACCAACAGCATTCTGTAAAACCCCGGGGCAACGACTTTGAACGATCCCCTGCAAAACCCATTTCTGATTATCGTCCCGAAAGAGTTGAAGCTTTGCCTCCACAGTCTAGAGCGTTACCAATACCATCGCCATCAAAATCAGGAACGAACAACGATGATCATTCAAAAGAAATGCCAAAGGTTTCTGTTAAACTGTTTCTTCATTCCAGCGGAGACATTGCAGCAAAGTTTCAATATAACCAGACAGTAATAGCTGCTATAAGGAGGGTCCCCAAGTCTACTTGGAATGCAAAAGAAAGGTTATGGATGTTGCCTTTATCTTCCTTGTCAGCAGCAGAAAAGGTTCTTGCTGAAACTTCTTGTGTTCAGGTTGATAGCCTAGATCCTCTAGTGCATCGGGCCATCGCCTCTGCATCTGCTGTTCCTGATCTTCGAGATCGATATGACAAGATCCCTAGCTACATTGAATCGAAACTTTTGCCATTTCAGCGAGAAGGGATTAGGTTTATATTGCAGCATGGAGGGCGGGCTCTTTTAGCTGATGAAATGGGACTAGGGAAAACTTTGCAGGCCATTGCTGTAACTTCATGCATTTCTGAGTCATGGCCTGTGCTCATACTTGCCCCATCTTCATTACGGTTGCAATGGGCTTCTATGATTCAACAATGGCTGGATATTCCTTCATCAGATATACTTGTTGTGCTATCTCAAAGTGGTGGATCAAATAGAGGAGGCTTCACTATAGTATCTTCTAATACAAAAAGTAGCATCCATCTAGATGGAGTGTTCAACATCATCTCGTATGATTTGGTTCCAAAGCTGCAGAAGATGCTTATGGCATCTGACTTTAAGGTTGTGATTGCAGATGAGTCACACTTTTTGAAAAATGCTCAAGCAAAGAGAACTACTGCTTCTCTTCCAGTTATAAAGAAAGCTCAATATGCGATATTGCTTAGTGGAACTCCTGCTTTGTCCCGGCCAATTGAATTATTTAAACAGCTGGAAGCATTGTATCCTGATGTTTATAAAAACGTCCATGAATATGGTAACAGATACTGCAAGGGTGGAATATTTGGACTCTACCAAGGTGCAAGTAACCATGAAGAACTGCACAATTTGATTAAGGCTACAGTGATGATTCGCAGGCTTAAAAAGGATGTTCTATCTCAACTTCCTGTAAAGCGCAGGCAACAGGTCTTCCTAGATTTGGATGCCAAGGACATGAAACAAATCAATGCTTTGTTTCGGGAGTTGGAGGTTATTAAAGCCAAAATTAAGGCATCCAAATCAAAAGATGAGACTGAAACGCTCAAGTTTACTCAAAAGAATCTTATTAACAAGATATATACTGAATCTGCTGAAGCCAAGATCCCAGCAGTTCTTGATTATATTGGAACTGTTATTGAGGCAGGTTGCAAGTTTCTGATATTTGCACACCATCAGCCAATGATAGATTCAATACATGATTTTCTAATCAAAAAGAAAGTGGGTTGCATCCGCATTGATGGCAACACACCTGCCGCATCTAGGCAAGCATTGGTTACAGATTTTCAGGAAAAGGATTCTATCAAGGCAGCCGTGCTGTCTATCAAAGCTGGAGGAGTTGGGTTAACTTTAACTGCTGCAAGCACTGTTATTTTTGCGGAACTATCCTGGACCCCAGGTGACCTAATTCAAGCAGAAGATCGTGCTCATAGAATTGGCCAGGTATCTTCTGTAAACATATATTACTTGTTAGCGAATGACACAGTTGATGACATCATATGGGACGTAGTGCAGAGCAAATTGGAAAATTTGGGACAGATGTTAGATGGCCATGAGAACACCATGGAGGTTGCAGCCAATCAGCCAGGGAATAGCCCTGCAAAGCAACAAACTCTTGACTGCTTTGTGAAGAGATGTAATAACATGGATGAGCCAGAACAGCAGCCTGACCCGAAACGCGCCCGACACTGA 2109 0.4215 MELDDWDLSAEDLDSLEKDAFQKIAQLRNSVSSSASVSSSSTSSNTHRFNVHQQHSVKPRGNDFERSPAKPISDYRPERVEALPPQSRALPIPSPSKSGTNNDDHSKEMPKVSVKLFLHSSGDIAAKFQYNQTVIAAIRRVPKSTWNAKERLWMLPLSSLSAAEKVLAETSCVQVDSLDPLVHRAIASASAVPDLRDRYDKIPSYIESKLLPFQREGIRFILQHGGRALLADEMGLGKTLQAIAVTSCISESWPVLILAPSSLRLQWASMIQQWLDIPSSDILVVLSQSGGSNRGGFTIVSSNTKSSIHLDGVFNIISYDLVPKLQKMLMASDFKVVIADESHFLKNAQAKRTTASLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCKGGIFGLYQGASNHEELHNLIKATVMIRRLKKDVLSQLPVKRRQQVFLDLDAKDMKQINALFRELEVIKAKIKASKSKDETETLKFTQKNLINKIYTESAEAKIPAVLDYIGTVIEAGCKFLIFAHHQPMIDSIHDFLIKKKVGCIRIDGNTPAASRQALVTDFQEKDSIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHENTMEVAANQPGNSPAKQQTLDCFVKRCNNMDEPEQQPDPKRARH 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g1765 702 Gene3D - 470 697 IPR027417 -
Mibi09g1765 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 433 IPR027417 -
Mibi09g1765 702 Pfam SNF2-related domain 228 491 IPR000330 GO:0005524|GO:0140658
Mibi09g1765 702 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 692 - -
Mibi09g1765 702 CDD DEXHc_HARP_SMARCAL1 210 433 - -
Mibi09g1765 702 FunFam Chromatin remodeling factor18 468 698 - -
Mibi09g1765 702 MobiDBLite consensus disorder prediction 28 108 - -
Mibi09g1765 702 SMART ultradead3 206 399 IPR014001 -
Mibi09g1765 702 CDD SF2_C_SNF 506 630 - -
Mibi09g1765 702 ProSiteProfiles HARP domain profile. 108 180 IPR010003 -
Mibi09g1765 702 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 662 IPR027417 -
Mibi09g1765 702 SMART helicmild6 536 619 IPR001650 -
Mibi09g1765 702 Coils Coil 647 667 - -
Mibi09g1765 702 FunFam Chromatin remodeling factor18 183 457 - -
Mibi09g1765 702 MobiDBLite consensus disorder prediction 58 77 - -
Mibi09g1765 702 Gene3D - 186 439 IPR038718 -
Mibi09g1765 702 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 511 662 IPR001650 -
Mibi09g1765 702 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 219 391 IPR014001 -
Mibi09g1765 702 MobiDBLite consensus disorder prediction 28 57 - -
Mibi09g1765 702 Pfam Helicase conserved C-terminal domain 515 619 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g1765 Mibi-ChrMibi09 36380146 36389400 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g1765 509 659 RAD5 or RAD16-like Gene Family AT1G11100 34.437 1.02e-17 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mibi09g1765 SNF2_N 7.3e-29 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi09g1765 09 36380146 36389400 Mibi09g1765 09 36380146 36389400 ECH