Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g1732 ATGAATAGATTGAATCATGAAAAGGCAAGGCTGGGTAGACTGGTAGAGTTATTTTCCCATAACCCTAACCTAAGCCCCAAAATTTCCAATCCCTTCTTGCGTCTTCCTCATCCCCCCACGGGCGCCACCTCTCAGCCTCGCCGCCGATCACAATTTCGTCAATCCCTGAACTATCTCCGCCGTTATAGGCGTGGTTTATTCTTTGATTACTATGGCGTAAATACATATTATAACATGGCAACAGCTGAGGCAGCTCCTGCTGCTCTTGGTCCCCGGTATGCGCCTGATGACCCCACTCTTCCAAAACCTTGGAAGGGATTGATTGATGGAAGTACTGGTCTATTATACTATTGGAATCCTGAAACCAACATCACCCAGTATGAGAAGCCCACAGCTCCACCACCCTTGCCTCCTGCAGTTTCTGCACCCAAGTTGGCTCCCATACCGGCGGCTCACTCAGTGCAACCTGGTGGGGTGGTGGCACAGCATGGGCAGCAGTTACTACAAACCTCTCATCAACAGGGACAACAAATGAGCCACCTATCCCAACAGCATGGTCCCCAGGTGGCACAGGTTGCTCAGCAGCAGCCTTCTCTAGCCGCACAAGCTGGACAACAACAGAGTTCGCAGTCGCTGCAGTCTATGCAACAACCTGGTTTGCAACAAGTCAGGCAGCAGCAGATGTTGCAGCCTATGGGTCAGCAAATTCCTCCTCAGCAAATGCATCATCAGATGCCACAACAAGCCATCCAGTCACAACCTTTTGGGCAAGGAGCCACCCAGGATCATGGTTCATATATGGGGCAGCCACAGGCCCATCAATTTAGTCACCAGAACCCACATTACATGCCATATTCACAAAACATGCACTCAAATGGGCAGCAAAGTTCCCAACCAATCCAGCATAACATGCATGGTCAGCCATTGGAAAATCAACAGGAGTTTAAATCAGCATTCCCGAAGATAGAGGATGTAGATTTTAAAAATGGAAGTCAAGTTGGACTTTCACCATCCCAGTATCAGCAAAAGAGTGCCTTGCCTCTGCAAAGCAACCAGAACATTCCTGCTGGAATATCCTCTGTCCAGGCGCCACTTGTTGGTGTTAATGCTGGCCAAGCACAGCCATTCAGTGCTATACCTGGTAGTATGCAACAACCTTCTGCAGCAATGCAATCGCAGCAGGGTAGTGCAGATTTAATTTATCAATACGGACATAACTTTCAAAACCCGATGGGCCCAGGAATGATGCATGGTCAGCCATCTACTGTCCATCCTGTTGACCTGAAGATGGGACATGAGGATATTTTACGTGGTAGAGCTGTGAATGAATATAACTACAACTCTAGCAAGGATATGCCATCAATGGGCTCACAGCAGCCGAGTATTGCACCAATACCTGTTTCAAGAAATCAGCAGGCTTATCAGCAGGATATGAGAATTGGCAGTTCCCCTTTCCAAAATGCAATGGCCGGTGGGAATGGGTTAAATGGCGTTCCAGGGAATAGTATTCATAACATGTTCAATCCTTCGATTGGAGGCCCCCCACCAGTTGCTAGTAACTCTTTGACGAGGCCTCATGTCACTGATATGTCGCCTTCTGAAATTTACTGTCAACAACATGAAGTTACTGCAACGGGTGACAATGTCCCTCCCCCCTTCATGACATTTGATGCTGCTGGGTTTCCTCCAGAGATTTTAAGAGAGATCTATTCTGCGGGCTTCTCAACTCCAACACCTATTCAAGCTCAAACATGGCCTGTTGCCTTACAGGGTAGGGACATAGTGGCTATTGCTAAAACAGGCTCTGGGAAAACATTAGGATATTTAATGCCAGCATTTATGATTCTTAGACAGAGGCGCAACAATCCCCTGAGTGGCCCCACAGTGTTGGTATTGGCCCCAACACGTGAACTTGCAACACAAATTCAAGATGAAGCCATAAAATTTGGCCGATCTTCACGTGTTTCCTGCACGTGCCTGTATGGTGGGGCACCGAAAGCTCTTCAGCTAAAAGAGCTAGACCGTGGAGCTGACATTGTTGTTGCTACACCTGGCCGTCTCAATGACATACTTGAAATGAAGAAAATTGACTTTAGGCAAGTCTCACTTCTTGTGCTTGATGAGGCTGACCGAATGCTTGATATGGGTTTTGAGCCTCAAATACGCAAGATTGTGAATGAGATCCCACCACGTAGACAAACTCTCATGTACACCGCAACATGGCCAAAAGAAGTGCGGAAAATTGCTGGTGATCTCCTTGTTAATCCTGTCCAAGTTAATATTGGAAATGTTGATGAGCTTGCTGCAAATAAAGCTATCACACAGTATGTCGAAGTTGTCCCACAAATGGAGAAACAAAGGCGTTTGGAGCAGATCATCAGAGCTCAAGAACGTGGTTCTAAGGTCATAATATTTTGTTCCACAAAGAGGTTATGTGATCAACTTGCCCGAAGCATTGGCCGTAGTTTTGGTGCTGCTGCAATCCATGGAGACAAGTCTCAAGGTGAAAGAGACTGGGTTTTGAATCAGTTTAGGACTGGGAAGTCACCAGTCCTAGTTGCCACTGATGTTGCTGCCCGTGGGCTTGACATTAAGGATATAAGGGTTGTGATCAACTATGATTTCCCTACTGGAATTGAGGACTATGTACACCGTATTGGTCGGACAGGTAGGGCTGGAGCAACTGGAGTGTCATACACCTTTATTTCTGAGCAGGACTGGAAACATGCTGGTGACTTGATTAAAGTTTTGGAGGGTGCTAACCAGCTTGTGCCTCCAGAGTTACGGCAGATGGCTTTGCGTGGGCCATCAAACTTTGGAAAGGAACGGGGTGGAATGAGCCGTTTTGACTCTGGTGGTGGCCGTTGGGATTCCGGTGGCCGTGGTGGCATGAGAGATGGTGGGTTTGGCGGGCGTGGTGGCATGAGGGATGGTGGTGGGTTTGGCGGGCGTGGTGGCATGAGGGATGGTGGTGGGTTTGGCGGTCGTGGTGGCATGAGGGATGGTGGTGGGTTTGGCGGTCGTGGTGGCATGAGGGATGGTCCAGGTGTGCAAGGTGGAAGAGGTGATTTCTTTCCTGGTAGAGGAGGCAACAGGGGTCGGGGAATGGGTGGCCCTCGAGGTGGTCATGTTGGCTGGGGTAGGGGTGAACGCGATTCTCATGATCGTTACAACATGGATGGGCGAGGACGTGGGCGTGGACGTTTTGACAACAGAAGAGATGTTGGTTATAGGAATAGAGGCAGAAGTTACAGTCGTAGCCCTGAAAGGGTTCGGACATGGGATTATAGCAGAAGTCGCAGTAGAAGCAGAAGCGGAAGCGGAAGTCGAAGCAGGAGTAGGAGCTGGAGTAGGGGCCGGAGTCGGAGTCGCAGCTGGTCTCGTGGTCGGAGTCGCAGTTACAGCCGTAGCATCAGCCGGAGTCCCAATCGCAGGCGTGGTCGCAGGAGTCGAAGTTACAGCCGCAGTTCTAGCCGCAGCCGTAGTCGAAGCCACAGCTATGACAGACGTGATAGGCCAGACAAACATGTTTCCGATCAGAATGAGCATAGAGAACCAGAAGCAAAATCTTCTGAACCAAAAGCATTCTCCACTTCTCCCAGGTCCCAGGGGAATTCGTTTGTGGGAACTGAACTCGTGGAACAGCTTCCTGTTGTTAGTAGTGTTGAGACAGATAATTCAGGGGCTGTAGCAGACCCTTGCCTGCAATCTGTTCCCGATGTCTAG 3726 0.4928 MNRLNHEKARLGRLVELFSHNPNLSPKISNPFLRLPHPPTGATSQPRRRSQFRQSLNYLRRYRRGLFFDYYGVNTYYNMATAEAAPAALGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNITQYEKPTAPPPLPPAVSAPKLAPIPAAHSVQPGGVVAQHGQQLLQTSHQQGQQMSHLSQQHGPQVAQVAQQQPSLAAQAGQQQSSQSLQSMQQPGLQQVRQQQMLQPMGQQIPPQQMHHQMPQQAIQSQPFGQGATQDHGSYMGQPQAHQFSHQNPHYMPYSQNMHSNGQQSSQPIQHNMHGQPLENQQEFKSAFPKIEDVDFKNGSQVGLSPSQYQQKSALPLQSNQNIPAGISSVQAPLVGVNAGQAQPFSAIPGSMQQPSAAMQSQQGSADLIYQYGHNFQNPMGPGMMHGQPSTVHPVDLKMGHEDILRGRAVNEYNYNSSKDMPSMGSQQPSIAPIPVSRNQQAYQQDMRIGSSPFQNAMAGGNGLNGVPGNSIHNMFNPSIGGPPPVASNSLTRPHVTDMSPSEIYCQQHEVTATGDNVPPPFMTFDAAGFPPEILREIYSAGFSTPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAFMILRQRRNNPLSGPTVLVLAPTRELATQIQDEAIKFGRSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFRQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGNVDELAANKAITQYVEVVPQMEKQRRLEQIIRAQERGSKVIIFCSTKRLCDQLARSIGRSFGAAAIHGDKSQGERDWVLNQFRTGKSPVLVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGVSYTFISEQDWKHAGDLIKVLEGANQLVPPELRQMALRGPSNFGKERGGMSRFDSGGGRWDSGGRGGMRDGGFGGRGGMRDGGGFGGRGGMRDGGGFGGRGGMRDGGGFGGRGGMRDGPGVQGGRGDFFPGRGGNRGRGMGGPRGGHVGWGRGERDSHDRYNMDGRGRGRGRFDNRRDVGYRNRGRSYSRSPERVRTWDYSRSRSRSRSGSGSRSRSRSWSRGRSRSRSWSRGRSRSYSRSISRSPNRRRGRRSRSYSRSSSRSRSRSHSYDRRDRPDKHVSDQNEHREPEAKSSEPKAFSTSPRSQGNSFVGTELVEQLPVVSSVETDNSGAVADPCLQSVPDV 1241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g1732 1241 MobiDBLite consensus disorder prediction 168 233 - -
Mibi09g1732 1241 Gene3D - 764 934 IPR027417 -
Mibi09g1732 1241 SMART helicmild6 809 893 IPR001650 -
Mibi09g1732 1241 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 585 759 IPR014001 -
Mibi09g1732 1241 SUPERFAMILY WW domain 92 133 IPR036020 GO:0005515
Mibi09g1732 1241 MobiDBLite consensus disorder prediction 1192 1209 - -
Mibi09g1732 1241 SMART ww_5 99 132 IPR001202 GO:0005515
Mibi09g1732 1241 ProSitePatterns WW/rsp5/WWP domain signature. 104 130 IPR001202 GO:0005515
Mibi09g1732 1241 CDD SF2_C_DEAD 773 902 - -
Mibi09g1732 1241 Pfam DEAD/DEAH box helicase 578 748 IPR011545 GO:0003676|GO:0005524
Mibi09g1732 1241 CDD WW 101 129 IPR001202 GO:0005515
Mibi09g1732 1241 MobiDBLite consensus disorder prediction 29 50 - -
Mibi09g1732 1241 MobiDBLite consensus disorder prediction 1161 1191 - -
Mibi09g1732 1241 Gene3D - 94 133 - -
Mibi09g1732 1241 MobiDBLite consensus disorder prediction 1045 1099 - -
Mibi09g1732 1241 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 705 713 IPR000629 -
Mibi09g1732 1241 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 554 582 IPR014014 GO:0003724
Mibi09g1732 1241 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 626 908 IPR027417 -
Mibi09g1732 1241 Pfam WW domain 100 130 IPR001202 GO:0005515
Mibi09g1732 1241 Pfam Helicase conserved C-terminal domain 785 893 IPR001650 -
Mibi09g1732 1241 FunFam ATP-dependent RNA helicase RhlB 763 935 - -
Mibi09g1732 1241 FunFam probable ATP-dependent RNA helicase DDX17 520 762 - -
Mibi09g1732 1241 MobiDBLite consensus disorder prediction 1221 1241 - -
Mibi09g1732 1241 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 526 932 - -
Mibi09g1732 1241 MobiDBLite consensus disorder prediction 1139 1158 - -
Mibi09g1732 1241 MobiDBLite consensus disorder prediction 1115 1129 - -
Mibi09g1732 1241 Gene3D - 529 763 IPR027417 -
Mibi09g1732 1241 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 788 932 IPR001650 -
Mibi09g1732 1241 SMART ultradead3 573 776 IPR014001 -
Mibi09g1732 1241 MobiDBLite consensus disorder prediction 1100 1114 - -
Mibi09g1732 1241 ProSiteProfiles WW/rsp5/WWP domain profile. 98 132 IPR001202 GO:0005515
Mibi09g1732 1241 MobiDBLite consensus disorder prediction 934 1209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g1732 Mibi-ChrMibi09 35753743 35760352 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g1732 552 933 Eukaryotic Initiation Factors Gene Family AT3G19760 33.943 1.08e-67 232