LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi09g1718	ATGGAGATAGATAGTTCATCAGAAATCAGAGGAGGAGGAGGAGGGAGCTACAAGGTCCAAAACAACAACGAGGAGGACGAACTGGACCTCAGGCGGGGCCCATGGACCGTCGATGAAGACCTCACTCTCATCAATCACATCGCCACTCACGGCGAAGGTCGCTGGAATTCCCTCGCCCGTTCCGCCGGCCTCAAACGAACTGGTAAGAGCTGCAGATTGAGGTGGCTCAACTATCTCCGCCCCGACGTCCGACGTGGCAACATCACCCTCGAAGAACAGCTCCTCATTCTCGAGCTCCATTCTCGCTATGGCAACAGATGGTCGAAGATCGCGCAGTATTTGCCGGGAAGGACGGACAATGAGATAAAGAACTACTGGAGGACAAGAGTCCAAAAGCACGCCAAACAGCTGAAATGTGACGTGAACAGCAAGCAATTCAAGGACACCATGCGTTTCCTCTGGATGCCTCGCCTAGTCGAGCGCATACAAGCCTCCGCCGCCTCCTCCTCCTCCATCTCAATCTCTCCGCCGCCACCCACCACCGTTCCTCCTCCCAATCACAACAACAACAACTTCCAATTCATCACCGGAAGTAGTAACTACATGACGGCTTCTTCTGACTCGTTCGGGTCAACTCAAGTGTCTGATTTGACTGACTACTATAATTATGGTGGTGGGGTTATGGTTGGGGATGATGATAAGGGTAATCGTAAGAACCACCCTACTCCAGATTATTATGGCCAAACGGTGGAATTGAGTTGTTCCGATCATAGCATAAGCAGCTTGGATATGCAAACCTTGGACCCAAACAATAATCAACAGCAGTATTGGGTTCAGAGCAATGGGGGTGACACGTCGGACGGTTTCTGGAATGTTGAAAACATGCTGTTTTTACAGCAACAGCTCAGTGACAACGTGTAA	921	0.5081	MEIDSSSEIRGGGGGSYKVQNNNEEDELDLRRGPWTVDEDLTLINHIATHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRYGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRFLWMPRLVERIQASAASSSSISISPPPPTTVPPPNHNNNNFQFITGSSNYMTASSDSFGSTQVSDLTDYYNYGGGVMVGDDDKGNRKNHPTPDYYGQTVELSCSDHSISSLDMQTLDPNNNQQQYWVQSNGGDTSDGFWNVENMLFLQQQLSDNV	306

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi09g1718	306	SUPERFAMILY	Homeodomain-like	29	126	IPR009057	-
	Mibi09g1718	306	FunFam	Myb transcription factor	32	84	-	-
	Mibi09g1718	306	CDD	SANT	100	128	IPR001005	-
	Mibi09g1718	306	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	80	134	IPR017930	-
	Mibi09g1718	306	ProSiteProfiles	Myb-like domain profile.	27	79	IPR001005	-
	Mibi09g1718	306	SMART	sant	31	81	IPR001005	-
	Mibi09g1718	306	SMART	sant	84	132	IPR001005	-
	Mibi09g1718	306	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	29	79	IPR017930	-
	Mibi09g1718	306	CDD	SANT	34	79	IPR001005	-
	Mibi09g1718	306	FunFam	MYB transcription factor	89	152	-	-
	Mibi09g1718	306	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	27	202	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Mibi09g1718	306	Gene3D	-	89	151	-	-
	Mibi09g1718	306	Pfam	Myb-like DNA-binding domain	32	79	IPR001005	-
	Mibi09g1718	306	Pfam	Myb-like DNA-binding domain	85	128	IPR001005	-
	Mibi09g1718	306	Gene3D	-	29	85	-	-
	Mibi09g1718	306	MobiDBLite	consensus disorder prediction	1	31	-	-
	Mibi09g1718	306	ProSiteProfiles	Myb-like domain profile.	80	130	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi09g1718	Mibi-ChrMibi09	35539134	35540558	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi09g1718	11	305	MYB Transcription Factor Family	AT5G49620	51.840	2.17e-88	265

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Mibi09g1718		Myb_DNA-binding	1.6e-14	CL0123