Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g1628 ATGGTGGATCTGAGCAGGAAAGGATCGGAAGCAGAGGAAGCTAATGCAAGGAATCCAAATGGGGCTTCGTCGGAAGAGAACCCAACAATGAGTGAGCAGAAGAAAACTTGCGCCGATTGCGGCACCAGCAAGACCCCTTTATGGCGTGGCGGTCCAGCTGGGCCAAAGTCACTGTGCAATGCTTGTGGTATCAAAAGCAGGAAGAAGAAAAGAGCGATTTTGGGTTTGAAGGGAAAGAGAAGCAGTGGTGGTAATAGCAACAACAACAATGGAAGCAGCAAGATTGGGGAAAGTTTGAAGCAGAGGTTGATGGCTTTGGGAAGGGAGGTTTTGATGCAGAGATCAACGGCTGAGAGGCAGGGGAAGAAGTTGGGAGAGGAAGAACAAGCTGCAGTTTTATTGATGGCTCTCTCTTATGGATCTGTTTATGCTTAG 435 0.4851 MVDLSRKGSEAEEANARNPNGASSEENPTMSEQKKTCADCGTSKTPLWRGGPAGPKSLCNACGIKSRKKKRAILGLKGKRSSGGNSNNNNGSSKIGESLKQRLMALGREVLMQRSTAERQGKKLGEEEQAAVLLMALSYGSVYA 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g1628 144 ProSiteProfiles GATA-type zinc finger domain profile. 31 67 IPR000679 GO:0006355|GO:0043565
Mibi09g1628 144 MobiDBLite consensus disorder prediction 16 40 - -
Mibi09g1628 144 MobiDBLite consensus disorder prediction 1 55 - -
Mibi09g1628 144 ProSitePatterns GATA-type zinc finger domain. 37 62 IPR000679 GO:0006355|GO:0043565
Mibi09g1628 144 Gene3D - 28 123 IPR013088 GO:0006355|GO:0008270
Mibi09g1628 144 CDD ZnF_GATA 36 71 IPR000679 GO:0006355|GO:0043565
Mibi09g1628 144 SMART GATA_3 31 81 IPR000679 GO:0006355|GO:0043565
Mibi09g1628 144 Pfam GATA zinc finger 37 71 IPR000679 GO:0006355|GO:0043565
Mibi09g1628 144 MobiDBLite consensus disorder prediction 73 98 - -
Mibi09g1628 144 MobiDBLite consensus disorder prediction 80 97 - -
Mibi09g1628 144 PANTHER OS01G0976800 PROTEIN 6 144 - -
Mibi09g1628 144 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 33 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g1628 Mibi-ChrMibi09 34583526 34584142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g1628 1 144 C2C2-Gata Transcription Factor Family AT3G06740 57.237 1.63e-50 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mibi09g1628 GATA 2.1e-16 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi09g1628 09 34583526 34584142 Mibi09g1628 09 34583526 34584142 ECH