Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g1477 ATGACTGCTCTTTTTTTCCCTGCAGTCATGGCTGGAGTTGCACCTGATACTTCCCAATATGATGCTCGTCAATACGATTCAAAAATGGAGCAGCTTACAACTGACGCGCAGGACTTCTTTACATCTTATGATGAGGTTCATGATAGTTTTGATGCCATGGGTTTGAAAGAGAATCTTCTAAGAGGCATTTATGCATATGGATTTGAGAAGCCTTCCGCTATACAGCAAAGGGGAATAGTTCCCTTCTGTAAGGGACTTGATGTCATTCAGCAGGCTCAGTCTGGAACTGGAAAGACAGCTACTTTCTGCTCTGGGATTTTGCAGCAGCTTGACTATAGTTTGATGGACTGCCAGGCCTTGGTATTAGCACCAACTCGAGAACTTGCTCAGCAGATTGAGAAGGTTATGCGAGCACTTGGAGACTACCTTGGTGTGAAGGTGCATGCATGTGTGGGAGGAACTAGTGTTCGTGAAGACCAACGCATTCTATCTAGCGGTGTTCATGCTGTTGTTGGTACCCCTGGTCGTGTGTTTGACATGCTGCGCAGGCAGTCCCTTCGGCCAGATTACATCAAGATGTTTGTCTTGGATGAGGCTGATGAAATGCTTTCTCGAGGTTTTAAAGATCAGATCTACGATATATTCCAGCTACTTCCATCCCAGATTCAGGTGGGAGTCTTTTCAGCTACAATGCCTCCTGAGGCTCTTGAGATCACTAGGAAGTTTATGAACAAACCTGTTAGAATTCTTGTGAAGCGTGATGAGCTCACCTTGGAGGGAATTAAACAGTTTCATGTCAATGTTGACAAAGAAGAATGGAAGCTAGACACACTCTGTGATCTTTATGAAACATTGGCCATTACTCAGAGTGTCATTTTTGTGAACACCAGAAGGAAGGTTGATTGGCTTACTGACCAGATGCGAAGCCGGGACCACACAGTTTCAGCAACCCATGGAGACATGGACCAGAATACCAGAGATATTATTATGCGTGAATTCCGTTCTGGGTCTTCTCGTGTTTTAATAACAACCGATCTTTTGGCTCGTGGTATTGATGTCCAGCAAGTGTCACTAGTGATTAATTATGATCTTCCTACGCAGCCTGAGAACTATCTCCATCGTATTGGCCGTAGTGGGAGGTTTGGCAGGAAAGGTGTTGCAATCAACTTTGTGACCAGGGACGATGAAAGAATGCTGTTTGACATCCAGAGATTTTATAATGTGGTAATTGAAGAGCTGCCGTCTAATGTTGCTGAACTCCTATAA 1266 0.4439 MTALFFPAVMAGVAPDTSQYDARQYDSKMEQLTTDAQDFFTSYDEVHDSFDAMGLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLMDCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHAVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSQIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVDKEEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVVIEELPSNVAELL 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g1477 421 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 195 203 IPR000629 -
Mibi09g1477 421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 402 IPR027417 -
Mibi09g1477 421 FunFam Eukaryotic initiation factor 4A-III 256 421 - -
Mibi09g1477 421 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 79 249 IPR014001 -
Mibi09g1477 421 Gene3D - 257 421 IPR027417 -
Mibi09g1477 421 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 260 421 IPR001650 -
Mibi09g1477 421 Pfam DEAD/DEAH box helicase 73 234 IPR011545 GO:0003676|GO:0005524
Mibi09g1477 421 SMART helicmild6 301 382 IPR001650 -
Mibi09g1477 421 PANTHER RNA HELICASE 33 405 - -
Mibi09g1477 421 CDD SF2_C_DEAD 261 391 - -
Mibi09g1477 421 FunFam Eukaryotic initiation factor 4A-II 36 255 - -
Mibi09g1477 421 CDD DEADc_EIF4A 52 250 - -
Mibi09g1477 421 Gene3D - 38 256 IPR027417 -
Mibi09g1477 421 SMART ultradead3 67 264 IPR014001 -
Mibi09g1477 421 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 48 76 IPR014014 GO:0003724
Mibi09g1477 421 Pfam Helicase conserved C-terminal domain 274 382 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g1477 Mibi-ChrMibi09 32390279 32392498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g1477 10 421 Eukaryotic Initiation Factors Gene Family AT1G72730 87.681 0.0 754