LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi09g1446	ATGAAGAAAGGAAACTTAGGCCTCAATCTCAAGCTCAATGTTCCTGCTTCTGATCAGGTTTCTTTCGCCAAGTTCCTGACTGAAAGCGGTACTTTTAAGGATGGCGATCTTCTTGTCAATAGGGATGGAGTTCGGATTGTGACTGAGGCTGAAGTCGAAGCTGCACCCCCCATCACAGCACTAGACAACCAGTTAAGTTTAGCAGACATAGACATAATCAAAGTGGTAGGCAAGGGAAATGGTGGTGTAGTGCAACTGGTACAACACAAATGGACTAATCAGTTTTTTGCGCTAAAGGTTATCCAAATGAATATTGAGGAGTCCATGCGAAAGCAGATAGCACAAGAGCTTAAAATCAATCAATCAGCTCAATGTCCATATGTTGTTGTTTGCTATCAGTCCTTCTATGATAATGGCGCAATATCAATCATCTTAGAGTACATGGACGGAGGTTCTTTAGCAGATCTTCTGAAGAAAGTTAGAACAATTCCAGAAAAATATCTTGCTGCCATCTGTAAGCAGGTGCTTAAGGGCTTGATATATCTTCACCATGAAAAACATATTATCCACAGGGACTTGAAACCTTCGAATCTGTTGATAAACCATCGAGGGGAGGTAAAGATTACTGATTTTGGTGTGAGTGTAATAATGCAAACTACGTCTGGCCAAGCGAATACTTTCATCGGCACATACAACTATATGTCTCCTGAGAGAATCAATGGAAGCCAGAATGGCTACAATTACAAAAGTGATATATGGAGTTTGGGATTGATATTGCTTGAGTGTGCTACTGGGCGGTTTCCATATACACCACCAGATCAAGGTGAAAGATGGGAAAGTATTTTTGAGCTAATTGAAACAGTTGTTGATAAACCTCCTCCTGCTGCCTCATCTGATCAATTTTCTCCTGAATTCTGCTCGTTTATCTCAGCATGTTTGCAGAAAGACCCAAAAGATAGACTGTCAGCTCAGGATCTTATGGGACATCCCTATGTCAACATGTTTGGGGACTCAGACGTAGATCTTTCGGCTTATTTCAAGAATGCAGGATCTCCGCTTGCAACAGTGCCTACTTCTACTTGATCATAG	1089	0.4141	MKKGNLGLNLKLNVPASDQVSFAKFLTESGTFKDGDLLVNRDGVRIVTEAEVEAAPPITALDNQLSLADIDIIKVVGKGNGGVVQLVQHKWTNQFFALKVIQMNIEESMRKQIAQELKINQSAQCPYVVVCYQSFYDNGAISIILEYMDGGSLADLLKKVRTIPEKYLAAICKQVLKGLIYLHHEKHIIHRDLKPSNLLINHRGEVKITDFGVSVIMQTTSGQANTFIGTYNYMSPERINGSQNGYNYKSDIWSLGLILLECATGRFPYTPPDQGERWESIFELIETVVDKPPPAASSDQFSPEFCSFISACLQKDPKDRLSAQDLMGHPYVNMFGDSDVDLSAYFKNAGSPLATVPTSTXS	362

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi09g1446	362	Pfam	Protein kinase domain	72	332	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi09g1446	362	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	188	200	IPR008271	GO:0004672\|GO:0006468
	Mibi09g1446	362	FunFam	Mitogen-activated protein kinase kinase 6	151	351	-	-
	Mibi09g1446	362	ProSiteProfiles	Protein kinase domain profile.	70	332	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi09g1446	362	Gene3D	Transferase(Phosphotransferase) domain 1	150	353	-	-
	Mibi09g1446	362	Gene3D	Phosphorylase Kinase; domain 1	47	149	-	-
	Mibi09g1446	362	PANTHER	MITOGEN-ACTIVATED KINASE KINASE KINASE	15	348	-	-
	Mibi09g1446	362	CDD	PKc_MAPKK_plant_like	85	335	-	-
	Mibi09g1446	362	SMART	serkin_6	70	332	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mibi09g1446	362	ProSitePatterns	Protein kinases ATP-binding region signature.	76	99	IPR017441	GO:0005524
	Mibi09g1446	362	SUPERFAMILY	Protein kinase-like (PK-like)	66	336	IPR011009	-
	Mibi09g1446	362	FunFam	Mitogen-activated protein kinase kinase 6	40	149	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi09g1446	Mibi-ChrMibi09	31960045	31964737	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi09g1446	1	327	MAP Kinase Kinase Gene Family	AT4G29810	68.452	4.48e-174	486

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE7	Mibi09g1446		Pkinase	8e-71	CL0016