LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi09g1411	ATGACGGACCAGACGGAGTTCAGTGTTCTATGCAGCCTCTTCACATGGACACAGAGAAGCAAATCCTCCGCCAAGAAGCGTTCCAAGTTCCGCAAATTCCTCGATACTTTCTGCAAAGACAGGAATTACTTCCCCGCAATTCGTTTGATTCTCCCAAATCTCGATCGAGAGCGAGGCTCCTATGGCCTCAAGGAGTCAGTTCTCGCTACTTCCCTCATTGACGCTCTCGGAATGTCCAGGGAATCCGAGGATGCTCTCCGCCTCATCAATTGGCGCAAAGGTGGCGCTAAAACTGGTGCCAATGCCGGCAATTTCGCTCTTGTCGCTGCTGAGGATATTGAAGTGGGAAAAGCTGTGCGCCCTCAACTAGCAAAGAGAGTTGCTAGTGCAACTGAAGCATGGAAAAAGCAAGGGATGGGCTTCAAAGTGATAGACAGGGATGAGGGCATTGTTCTGAAAGACCTTGGTTCCAAATGGGAACCCAGCGACCGCAGTGGAAAGTGGATGAAATTGAAGCCAGAGTATATACATGCTGGTTCTGATCTGGATGCCCTTATTATAGGTGGCTATTATGGCTCTGGACGAAGAGGAGGGGAGGTTGCTCAATTCTTGGTGGGCCTAGCAGAGCGTCCTTCCCCCAGTGCATATCCCAATCGATTTATCTCATTTTGTAGAGTTGGTACTGGACTTTCTGATGATGAGCTTGATGCCCTAGTAACCAAACTGAAACCATATTTCAGATCAATAATTCTCTCTATAACCAGTGACATTCGAACAATAGAATCTGAGGTATTTGCGGCACCGTACAGTCTGAGATTTCCTCGAATTGACAGGGTGAGATATGACAAACCCTGGCATGAATGTCTTGATGTGCAGTCATTTATAGATATCGTGCATTCTAGCAATGGCACCACAAAGGCAAGCACAGAGTACGGAAGCATGCAGGATAGTAAATCAAAACGCATAAAATCCTCTAAAAGGGAAGGGAAAAAAAATATGTCCGTTGTCCCTTCTCATTTAATTCAGACTGATGTTTCCAGTGTTAAGGGGGGCTCGTTGATATTTTCCAATATGATGTTTTGTATCCTTGAGAGCCTTTCTCCTATGATTTGTTCACAACAGCCAAAGTGCTGTAAGGAGAGGGAAGAGAGAAGTTGGGGCTGGTTTGACCCCCAGCTGTGGTCCCTCCTCTTCTCTCTTTCTCTATCGACACAGTACTTCTGCTGCATGGAGGAGATACCAGGGGGATTGAAGTGTCTTGAGGGTGCAATGAAATTTTCCTTGACAGATACAGATTTCGTCAATGTGCCTCCATCCCATTCTCTTGATTCCTTGCATAAGATGATTGCTGAGAATGGGGGCACTTTCTCTATGAACTTGAACAATTCAGTCACCCATTGTGTTGCAGCAGATAGCAAGGGTACTCTCTCTCTCTGCCCCTTCCCTCTCCATCTCTCTTCCTTTTTATGTGCTTGCCTGCAGGTTCATGAGAGTGCAAGCACTCAAAAGGGCCTTGCTCTATTTCTCAGATATACAATAAAGACTATTCTCGCAGGTTTTAAGTTTGAAGCTGCAAAACGTCGTGGTGATATCATTCATTATAGCTGGATCACAAAGAAGAAGTTGTATGAAGAAATTGATGAGTTCTCAGACTCATACTACTTGAATCTTGATTATGCGGACATCAAGCAGTCTGAAGTTCTCATGAGCGGCGGGAAAATTGCCAATAGTCCTACTTCTGCCACACACTTTGTAGCCTTGTCGGTTCCTGTATATAATGTGGACTTCAAAGAAATTTTAACCAGTTTCACTTCCGTCGAAAGAAAACTTCTATCAAGCAAGCGGTTGCATGTTGTTGGATCTCAGTGGCTTGAAGATTGTTTGGAACAAGGCCAAAGATTACCAGAACAAACATATACATTGAAGCCCAGCGGAATAGAAGAACTAACTACTGAAGAGTTCGAACATGACTTGGCTTTAGAGGGTCATTGTAGTGGAGATGTAGTAGAAGACCAAAATTCGTCTCTCGTCTCTGAAAAGAGAAGTCAGCTGAGAAGTGCAAAACCTGCTGAAGAAAGTTTGGTGTCCCTGGAGAAGAGTGGCAAAAGGAAACGAGGAAGACCTGTAGGCAGAGGCAGTAAAACGGTAAAGACGGCCAGCAACCAAACTCATCGGTTACGAGCACGTATTGGAAAAAGGCCCGCAAAGATATGTGAATATGAAACAGATGACAGTGGTTCTCATGATGAAAAGACATTTGAAGGTGAGATTGACTCTAGAGAATTTAGTCTTGACTCTCATACCGGTGCAGAAGTCCCTGAGACTGTGATATTACAAAATCCTGAGTCATCAAAACGAGATGATGCAGTTAAGCAAGAGGCTTCGAAGGATGCCGAGCTTGAAGAACATTCTCTTCCTGAAGTTAAAATGACTGAGCAGCATAATGACCAAAACAGTGGGGCTGATCACTTAGAAGTTATGGCTGATCCAATACAAGCGATGCTTTTTGACATGTTTCCTAGCCTTGCGACAAAGAAAGTTGATGAAACAAACAATGATGATAAGGATATTAAGCCACCTGAACGATTCAATGATAATGTTAAGGATGATAAGCCCCCTGAACAATCTAATGCTGAGCCTTCAAGGAAAAAGAAGAAAGTTAGCTATAAGGATGTTGCTAATGAGCTGCTTAAGGATTGGTAG	2703	0.441	MTDQTEFSVLCSLFTWTQRSKSSAKKRSKFRKFLDTFCKDRNYFPAIRLILPNLDRERGSYGLKESVLATSLIDALGMSRESEDALRLINWRKGGAKTGANAGNFALVAAEDIEVGKAVRPQLAKRVASATEAWKKQGMGFKVIDRDEGIVLKDLGSKWEPSDRSGKWMKLKPEYIHAGSDLDALIIGGYYGSGRRGGEVAQFLVGLAERPSPSAYPNRFISFCRVGTGLSDDELDALVTKLKPYFRSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKPWHECLDVQSFIDIVHSSNGTTKASTEYGSMQDSKSKRIKSSKREGKKNMSVVPSHLIQTDVSSVKGGSLIFSNMMFCILESLSPMICSQQPKCCKEREERSWGWFDPQLWSLLFSLSLSTQYFCCMEEIPGGLKCLEGAMKFSLTDTDFVNVPPSHSLDSLHKMIAENGGTFSMNLNNSVTHCVAADSKGTLSLCPFPLHLSSFLCACLQVHESASTQKGLALFLRYTIKTILAGFKFEAAKRRGDIIHYSWITKKKLYEEIDEFSDSYYLNLDYADIKQSEVLMSGGKIANSPTSATHFVALSVPVYNVDFKEILTSFTSVERKLLSSKRLHVVGSQWLEDCLEQGQRLPEQTYTLKPSGIEELTTEEFEHDLALEGHCSGDVVEDQNSSLVSEKRSQLRSAKPAEESLVSLEKSGKRKRGRPVGRGSKTVKTASNQTHRLRARIGKRPAKICEYETDDSGSHDEKTFEGEIDSREFSLDSHTGAEVPETVILQNPESSKRDDAVKQEASKDAELEEHSLPEVKMTEQHNDQNSGADHLEVMADPIQAMLFDMFPSLATKKVDETNNDDKDIKPPERFNDNVKDDKPPEQSNAEPSRKKKKVSYKDVANELLKDW	900

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Mibi09g1411	900	MobiDBLite	consensus disorder prediction	784	810	-	-
Mibi09g1411	900	SUPERFAMILY	BRCT domain	437	475	IPR036420	-
Mibi09g1411	900	ProSiteProfiles	ATP-dependent DNA ligase family profile.	143	209	IPR012310	GO:0003910\|GO:0005524\|GO:0006281\|GO:0006310
Mibi09g1411	900	Gene3D	BRCT domain	433	552	IPR036420	-
Mibi09g1411	900	MobiDBLite	consensus disorder prediction	316	331	-	-
Mibi09g1411	900	Gene3D	-	1	122	IPR036599	GO:0003677\|GO:0003910\|GO:0006281\|GO:0006310
Mibi09g1411	900	MobiDBLite	consensus disorder prediction	846	890	-	-
Mibi09g1411	900	SMART	BRCT_7	544	631	IPR001357	-
Mibi09g1411	900	SMART	BRCT_7	417	496	IPR001357	-
Mibi09g1411	900	MobiDBLite	consensus disorder prediction	847	890	-	-
Mibi09g1411	900	Pfam	twin BRCT domain	440	474	IPR001357	-
Mibi09g1411	900	PANTHER	DNA LIGASE 4	564	894	IPR029710	GO:0003677\|GO:0003910\|GO:0005524\|GO:0006281\|GO:0051103
Mibi09g1411	900	SUPERFAMILY	BRCT domain	563	643	IPR036420	-
Mibi09g1411	900	Gene3D	BRCT domain	556	659	IPR036420	-
Mibi09g1411	900	ProSitePatterns	ATP-dependent DNA ligase signature 2.	148	172	IPR016059	GO:0003909
Mibi09g1411	900	MobiDBLite	consensus disorder prediction	303	331	-	-
Mibi09g1411	900	MobiDBLite	consensus disorder prediction	732	767	-	-
Mibi09g1411	900	MobiDBLite	consensus disorder prediction	679	826	-	-
Mibi09g1411	900	SUPERFAMILY	Nucleic acid-binding proteins	180	299	IPR012340	-
Mibi09g1411	900	Gene3D	DNA ligase/mRNA capping enzyme	123	174	-	-
Mibi09g1411	900	ProSiteProfiles	BRCT domain profile.	571	641	IPR001357	-
Mibi09g1411	900	Pfam	DNA ligase N terminus	6	111	IPR012308	GO:0003677\|GO:0003910\|GO:0006281\|GO:0006310
Mibi09g1411	900	Gene3D	-	250	304	IPR012340	-
Mibi09g1411	900	Gene3D	-	176	249	IPR012340	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi09g1411	148	300	Core DNA Replication Machinery Family	AT1G08130	28.495	9.44e-13	70.5