Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g1298 ATGGGGATTGAACAACGAGGAGGAGGAGGCCTTAAAGGCTTACGTGGCAGCGGCTGGAGCATCGCCGCCAAATCATGCGACTCCTGCAAATCATCCGCCGCCGCCATATTCTGTCGCGTGGATTCCGCCTTCCTATGCGTCCCATGTGACACACGTAACCACTCCGATGATAACAATAGTAATAATAAATTCCACACACGTCGCCATGAACGTGTGTGGATGTGTGAAGTATGTGAACAAGCCCCAGCTGCTGTCACCTGTAAGGCTGACGCAGCCGCCTTATGTGTCACCTGTGATTCCGACATCCACTCCGCCAACCCGTTAGCCCGCCGCCACGAGCGGGTCCCGGTGGAGCCCTTCTACGACACCGCCGCCGAGTTCGCCGCCAAGTCCTCCGCCGCCGCCGCCGCCTTCAACTTCTTCGTCCCCAATAACACCGGGATTTGCTCCGATGGGTTCCGGGCCGAGGATTCGGACCCGGTCCCGGTCCCGTGGATGGTGCCGGGTCAGAATTTTAATAATTCTAAGGTGGTGGCCGGAGTTCCGCCGGAGGTCGTCAAGTCCGGCGACATGTTTTTCTCTGAAATTGACCCTTTTATGGATTTTGATTACTCCAATAATTCTTATCAGAATCATAACAGCCACCACCACCACGGCGGCGCCGGAAACGACAGCGTCGTGCCGGTTCAGACCAAACCGGTTTCGGCTCCGATGATGAATCACTCCGACAGTAATTGCTTTGATATTGATTTTTGCAGGTCCAAGCTCTCTTCCTTTAGCAGCAGCTACCCAAGCCAAAGTGTTTCGTCGTCTTCGCTTGATGTTGGGGTTGTACCGGATTCGGTGTCAGAAATGTCATTCACGTTGGGGATAAACATGGGCAATAGCTCCGAATTGAGTGGGATCGGGTCGGTTCATAACCCGGTGGGTCAGCTGGGCGGGTTGGACCGGGAAGCGAGGGTGTTGAGATACAGGGAGAAAAGGAAGAACCGGAAGTTTGAGAAGACGATCAGGTACGCTTCGAGGAAGGCATACGCGGAGACCCGGCCCAGGATTAAGGGCCGGTTCGCTAAACGGACCGAACCTGAGTCGGATGTGGACCGGGTTTACAGCCCGGTTAGCACAGGGAGTCTTATGATGGATGCTCAGTACGGCGTCGTACCATCGTTTTAG 1173 0.5507 MGIEQRGGGGLKGLRGSGWSIAAKSCDSCKSSAAAIFCRVDSAFLCVPCDTRNHSDDNNSNNKFHTRRHERVWMCEVCEQAPAAVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFYDTAAEFAAKSSAAAAAFNFFVPNNTGICSDGFRAEDSDPVPVPWMVPGQNFNNSKVVAGVPPEVVKSGDMFFSEIDPFMDFDYSNNSYQNHNSHHHHGGAGNDSVVPVQTKPVSAPMMNHSDSNCFDIDFCRSKLSSFSSSYPSQSVSSSSLDVGVVPDSVSEMSFTLGINMGNSSELSGIGSVHNPVGQLGGLDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEPESDVDRVYSPVSTGSLMMDAQYGVVPSF 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g1298 390 SMART bboxneu5 21 54 IPR000315 GO:0008270
Mibi09g1298 390 SMART bboxneu5 70 117 IPR000315 GO:0008270
Mibi09g1298 390 CDD Bbox1_BBX-like 26 74 - -
Mibi09g1298 390 ProSiteProfiles Zinc finger B-box type profile. 21 74 IPR000315 GO:0008270
Mibi09g1298 390 CDD Bbox1_BBX-like 75 117 - -
Mibi09g1298 390 Pfam CCT motif 317 359 IPR010402 GO:0005515
Mibi09g1298 390 Pfam B-box zinc finger 72 117 IPR000315 GO:0008270
Mibi09g1298 390 Pfam B-box zinc finger 24 65 IPR000315 GO:0008270
Mibi09g1298 390 ProSiteProfiles CCT domain profile. 317 359 IPR010402 GO:0005515
Mibi09g1298 390 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 26 371 IPR045281 GO:0009909
Mibi09g1298 390 ProSiteProfiles Zinc finger B-box type profile. 70 117 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g1298 Mibi-ChrMibi09 29452064 29453579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g1298 8 390 C2C2-CO-like Transcription Factor Family AT5G57660 51.870 7.67e-116 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Mibi09g1298 zf-B_box 9.6e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mibi09g1298 09 29452064 29453579 Mibi09g1298 09 29452064 29453579 ECH