Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g1297 ATGATGCTTTCTTCTTCTTCGCCTACTAAAATACTAATTGGCCTGTCCTTAGACCCAGATGATAGCAGAGAACTTCTCTCATGGGCAATTAGAGTACTAGCCAATCCAAATGACACCATTGTGGCCTTGCATGTTCTTGTTTCTAAGGAGAAGAAGAAGAAGAGGAAGAAGCGTGGTTCAATGACAAGAAGGCAGTCACAACTTCGACAGGCAAAAGCCTATGTCATATCTCTGCTTGGTGAATTTGCAAAGACGTGTTGGTCTAAGCAGGTGAATCTGGAAGCCAAAGTGGCATTTAGTTCCAATGTAGGTGGAGGTTTAGTTGAAGAAGCCAAGTCCATATCTGCTGACTTTCTTCTCCTTCGTGGTTCTAGAAACCAGTCTCACAAGAACCAAGCCTCTATTGGAATCACCAAGTACTGCTATGATAATGTTCAACAAAGCTGCACTGTAGTCTCAGTTGGGAAAAGCTCCAAATCCAATTTTACAAACTCTCAAGATAACTATGAGTCAAGCTCAGGGTGGTTTTTGAAGGAAAAGGAAAGCGACAGGGGAGAATCATCCCCTGTTTTGAAGGCTTTTATCTCTGAATCTAATAATTGTAAGACTCAAACACGTTCACCAAGAACAGTATTGGATGCACTTGAGGGACAATCTAATAGCACAGAAGATGACACATTTAGCACAAGGGTCTCAAGCATCACAGACACTCCATCAACAGGTTCTAAAATGAAGAGCCAACCCAATATTTTAAGGAAACCACAGTCACCTTTCAGATTCATAGCTTCACTCCTTTCCTCACCACTTAGAAGGAAAAACTCTAAAAAGTCCCAAAATGAAAAGAGACAACCTTTGTTAAAATGCTTCAGCTATGAGGAAATCTGCAATGCCACAAATGGCTTCCACCAAGATAATTTAGTGGGAAGAGGTGGGTACTCAGAAGTATACAGAGGAGATATCTGTGATGGAGAAACAATTGCAGTGAAAAGGTTGTCCAAGGACAACAAGAATGCTAGCAAGGAAAAGGAGTTCCTCATGGAATTAGGAGTTATCGGACATGTCTGTCATCCTAATACTGCTTCTTTGGTTGGTTGCTGCATTGAAAATGGACTCTACCTCATTTTCAAGTACTCCCAAAATGGAAACTTGGCCACTGCATTGCATGGAAAATCAGGAACTACACTTGACTGGCCAGTGAGATACAAAATCGCCATTGGAGTAGCAAGGGGGCTGCATTATCTTCATAAGTGTTGCAAACGCAGAATAATTCATCGTGACATTAAAGCCTCCAATGTGCTTCTCGGTCCAGATTATGAACCACAGATCACTGATTTTGGACTAGCAAAGTGGCTTCCAAACAAGTGGACGCACCATGCTGTAATACCAGTGGAAGGCACGTTTGGTTATTTGGCACCAGAGTCCTTCATGCATGGAATAGTGGATGAGAAAACTGATGTTTATGCTTTTGGCATTCTTCTTCTGGAGATTATAACTGGAAGAAGACCTGTTGATTCTAAGAAACAGAACCTTCTCCTTTGGGCAAAGCCTCTGATGGAATCAGGGAACATTAAGGAGCTAGCTGATCCCAGAATGGAAGGTGTATATGATGAAGAGGAATTGAATAGAATAGTGGTCACAGCTTCATACTGTGTGAGACAATCTCCACTTTGGCGTCCCCCAATGAGTGAGGTGTTGGAACTTTTAACCAATGGAGAAAGCAGTGAGGCTGGGAATAGCTGGAGGATCCCAAATTTCACATCTGATGAATTGGATGATTATTCTATGGCTTTTGGATATGAAGTGCCTTCTGATATCTCTCTTGAGGAGTTTTTGTGA 1836 0.4194 MMLSSSSPTKILIGLSLDPDDSRELLSWAIRVLANPNDTIVALHVLVSKEKKKKRKKRGSMTRRQSQLRQAKAYVISLLGEFAKTCWSKQVNLEAKVAFSSNVGGGLVEEAKSISADFLLLRGSRNQSHKNQASIGITKYCYDNVQQSCTVVSVGKSSKSNFTNSQDNYESSSGWFLKEKESDRGESSPVLKAFISESNNCKTQTRSPRTVLDALEGQSNSTEDDTFSTRVSSITDTPSTGSKMKSQPNILRKPQSPFRFIASLLSSPLRRKNSKKSQNEKRQPLLKCFSYEEICNATNGFHQDNLVGRGGYSEVYRGDICDGETIAVKRLSKDNKNASKEKEFLMELGVIGHVCHPNTASLVGCCIENGLYLIFKYSQNGNLATALHGKSGTTLDWPVRYKIAIGVARGLHYLHKCCKRRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHHAVIPVEGTFGYLAPESFMHGIVDEKTDVYAFGILLLEIITGRRPVDSKKQNLLLWAKPLMESGNIKELADPRMEGVYDEEELNRIVVTASYCVRQSPLWRPPMSEVLELLTNGESSEAGNSWRIPNFTSDELDDYSMAFGYEVPSDISLEEFL 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g1297 611 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 8 121 - -
Mibi09g1297 611 MobiDBLite consensus disorder prediction 216 250 - -
Mibi09g1297 611 Pfam Universal stress protein family 10 152 IPR006016 -
Mibi09g1297 611 PANTHER OS08G0249100 PROTEIN 52 580 - -
Mibi09g1297 611 Coils Coil 328 348 - -
Mibi09g1297 611 Gene3D Phosphorylase Kinase; domain 1 262 377 - -
Mibi09g1297 611 FunFam Probable receptor-like serine/threonine-protein kinase At5g57670 378 582 - -
Mibi09g1297 611 Gene3D HUPs 3 152 IPR014729 -
Mibi09g1297 611 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Mibi09g1297 611 Gene3D Transferase(Phosphotransferase) domain 1 379 582 - -
Mibi09g1297 611 SUPERFAMILY Protein kinase-like (PK-like) 277 568 IPR011009 -
Mibi09g1297 611 SMART serkin_6 301 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi09g1297 611 ProSiteProfiles Protein kinase domain profile. 301 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mibi09g1297 611 FunFam Putative receptor-like serine/threonine-protein kinase 268 377 - -
Mibi09g1297 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Mibi09g1297 611 CDD USP_Like 10 152 - -
Mibi09g1297 611 Pfam Protein tyrosine and serine/threonine kinase 303 566 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g1297 Mibi-ChrMibi09 29436022 29439857 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g1297 289 607 Trihelix Transcription Factor Family AT1G70460 40.356 5.49e-74 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Mibi09g1297 PK_Tyr_Ser-Thr 9.6e-41 CL0016