LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mibi09g1151	ATGGGTAGAAAAAAACTAACAATGAAGACTCTTCAGAATAAGAATGCTCGTAGGGCATTGTTTGAGAAGAGGAGGGAGGGTTTATTAAAAAAAGCTTCTGAACTTTCCATACTTTGTGGAATCGATGCCTGTTTGATAATCTTCCCTCCTTCAGATTCTGAAAACCCCAATAAAGCTGAAACCTTTCCCCAAGATCCCACTGAGGTGATTCGCAAATTTCAAGAGTTTAACCCCAAGAAGAAACAAAAGAAGAGCTACGATCTCCTTGAATTCTTCAATGATAGGAAAAACCAGATTGAAGCTGACATTTCCAAAATCCGTGAACAGAGATTTATGATGTTGTCTCCAACCTGGGACGACCACTTCAACAACATGGGAGAGGATCAGCTTAGGATGTTTATTGCTTCTTTGGATTCTAAGCTTCAAGAATGCAATCAAACCATTGGGTTTTTGAAAGCCAAGAAATCAGATATGCCTGTGATTCCAATTGTTGATAATAATACTGACTTGATGGAATCTGAGCTTCAAGAGGCCTTAAGTTCCTCTTCAACCTTGGACTGTGAGCTTCAAGAGTGTAATAATCAAATGATTGATTGA	597	0.3869	MGRKKLTMKTLQNKNARRALFEKRREGLLKKASELSILCGIDACLIIFPPSDSENPNKAETFPQDPTEVIRKFQEFNPKKKQKKSYDLLEFFNDRKNQIEADISKIREQRFMMLSPTWDDHFNNMGEDQLRMFIASLDSKLQECNQTIGFLKAKKSDMPVIPIVDNNTDLMESELQEALSSSSTLDCELQECNNQMID	198

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mibi09g1151	198	CDD	MADS	2	53	-	-
	Mibi09g1151	198	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	165	-	-
	Mibi09g1151	198	SMART	madsneu2	1	65	IPR002100	GO:0003677\|GO:0046983
	Mibi09g1151	198	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	12	52	IPR002100	GO:0003677\|GO:0046983
	Mibi09g1151	198	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Mibi09g1151	198	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Mibi09g1151	198	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Mibi09g1151	198	SUPERFAMILY	SRF-like	2	95	IPR036879	GO:0003677\|GO:0046983
	Mibi09g1151	198	ProSiteProfiles	MADS-box domain profile.	1	51	IPR002100	GO:0003677\|GO:0046983
	Mibi09g1151	198	Coils	Coil	89	109	-	-
	Mibi09g1151	198	Gene3D	-	13	99	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mibi09g1151	Mibi-ChrMibi09	26205932	26206528	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mibi09g1151	1	158	Type I MADS-box Gene Family	AT2G03060	31.056	2.51e-16	74.3

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Mibi09g1151		SRF-TF	7.3e-17	No_clan