Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g1142 ATGGCTGGAATGCTTCCTGGAGTTGAATCTGCTCGAAGGAGACGCTTACATCAGAGCGGGGCCAACACTGATTGCCCTTATTTCACCAGACGATCTTCCCTCTGCTTGTATTCAACCAAACAAGAATTCCTTCTTTCCTCTTCTTCTTCTTCTCTTCAGGTTCGTCTCGCTTTGGCGCGAATAGACGAGAGGCTCGCTGGAGCAGCTGGAGAAGCCAAAGAAAGATTGGATGAGAGATTAAGATCAGTTCAAATGATTTCATCTAACAAAAGTCAAAATATCAAAGAGAAGAAGAAAAGCAGAGAAGGAAGACCAGAGTTACACATAGAGGTATATGGATCAAAGAAAAGTGGTGGGTCAAGAATATTCAATTGGAGGAAAATGAGCTGGAAGGCTTCAGATCAAGAGGATTGTGCAGTGTGCTTGGAGTCATTCAAGGTTGGGGAAACACTGATCCATCTTCCTTGTGCTCACAAGTTTCATTGCAGTTGCCTGGAGCCATGGCTACAAAATAATAGTTATTGCCCATGTTGCAGAACTTCCATTTTTATCTCTCACTAG 561 0.4332 MAGMLPGVESARRRRLHQSGANTDCPYFTRRSSLCLYSTKQEFLLSSSSSSLQVRLALARIDERLAGAAGEAKERLDERLRSVQMISSNKSQNIKEKKKSREGRPELHIEVYGSKKSGGSRIFNWRKMSWKASDQEDCAVCLESFKVGETLIHLPCAHKFHCSCLEPWLQNNSYCPCCRTSIFISH 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g1142 186 PANTHER SI:CH211-59O9.10 12 183 - -
Mibi09g1142 186 Pfam Ring finger domain 137 179 IPR001841 -
Mibi09g1142 186 SUPERFAMILY RING/U-box 124 184 - -
Mibi09g1142 186 FunFam Zinc finger family protein 111 184 - -
Mibi09g1142 186 CDD RING-H2_PA-TM-RING 137 179 - -
Mibi09g1142 186 SMART ring_2 138 178 IPR001841 -
Mibi09g1142 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 184 IPR013083 -
Mibi09g1142 186 ProSiteProfiles Zinc finger RING-type profile. 138 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g1142 Mibi-ChrMibi09 26043900 26045980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g1142 63 182 C3H Transcription Factor Family AT1G49850 37.681 4.66e-18 77.4