Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g1083 ATGGACGAAGATTTGCTTAAGCGAAACACCGATTGTGTCTATTTCTTGGCTTCCCCTCTCACTTGCAAGAAAGGGGCTGATTGTGAGTATCGGCATAATGAAATTGTGAGGCTAAACCCAAGGGATTGCTGGTACTGGTTATCTGGGAACTGTCTCAATCCAACGTGTGCTTTTAGACATCCTCCATTGGAAGGGCATACTGGAGTGTCATCTGAACCTGCACAATCTTCTTTACCTGCAAACAAGACAATTCCATGTTATTTTTTCTTCAATGGATTTTGCAATAAAGGTGACAGATGCACTTTTTTGCATGGGCCTGATTATAGCTCTCCTCCTGCTAATTCTGTGAATAATGACTCTGGAAGTAATGATGTCCTGCCCTCAGAAAAGAAAACATCATCTGGAAATAAAGCTGGTGTAGCAATAACAACTGTGGCACATCCTGATCCATCTGAAACTTTCACGAAGGCTATGCATAATTGTAAATTTGACCCAGTTGAGGATCCTCAGCGATCAGTACATGAAAATGTTAAACTGCAAGACAATTTACAGGCTATATCTGATTATGAATATAAAGAAGCCACAGTCATCACGCCTGACTCTGTATCTCCAGAGAAGGACTATGTACAAAGCATTTCCCATATATGCACGGATCATGGTACACATGAACAAGTGCATAATCATATGGAACCTGAGGAACGATTTGAATCGTCCCCTGGATTTGATGTTCTTGTTGATGATGAAGTGGAGGACCCGGTCTATGAGGATGATTCTGAATATATACCACTTGATGGGGAACACGGGGAAATGAATGGGCAGTACATACAGTGTGAATTTGAAGATGCCGTTGAGTATGATCCTGAATGCTCTGAAGCTGACATTTTGTATGATGAGATGTATCATGGTCGCAGATTAATGGATGATGATCGATTTATGGATGATGATCGTATTCTTGCCGATGATAGAATAGTCCCTGCTTTTACCAGAGAGAGAATCATAGCCTCTATAATGTCCAGGAAGAGGATTCGGATGCCTACTGAAATGACTGCTTGTGACAGGAACTTAGATCTTCGAGACCATCTGAGAAGGCGAAGGGAATTTTATGGTAGACCAGTTACAGGATTTTCAAGAAGACGTGAATCGTCTTGTCTGATAATTGAAAACCAAGAAAGGCTGAGAACACACTGTTTTGATCAGAGGCTTAGTAGAAGGTTGATGTCTGAGGTGGGATTTAACTCTCTAGACTCAAATGGAGAGGGCAAAACTCGTTCAGTTTTTAATAGGCACAGATTATTTAGGCACCCTAGGCAACATTCACCAAAGAGGCTGCAGCATTATAGAGAAAACCATGGTAAACAGCAGTTTCTTCCATCTAGAATCTTCAGGAAACCATTTTTAAAAAGAAGGCGATATACTCCCGCACCTACTGACACGGCGTTTCATGGACCTAAGACTCTAGCAGAAATTAAAGAAGAGAAGGCAGCAGCTGCAGGAAGAGGGCATTTCAATCCAGCTACTTCGGCTGACTTCCAGGATCCCAAACCTCTAAGTGAAATCCTCAAGGGCAAGAAGAGGCTGGATTGTGAATGA 1590 0.4201 MDEDLLKRNTDCVYFLASPLTCKKGADCEYRHNEIVRLNPRDCWYWLSGNCLNPTCAFRHPPLEGHTGVSSEPAQSSLPANKTIPCYFFFNGFCNKGDRCTFLHGPDYSSPPANSVNNDSGSNDVLPSEKKTSSGNKAGVAITTVAHPDPSETFTKAMHNCKFDPVEDPQRSVHENVKLQDNLQAISDYEYKEATVITPDSVSPEKDYVQSISHICTDHGTHEQVHNHMEPEERFESSPGFDVLVDDEVEDPVYEDDSEYIPLDGEHGEMNGQYIQCEFEDAVEYDPECSEADILYDEMYHGRRLMDDDRFMDDDRILADDRIVPAFTRERIIASIMSRKRIRMPTEMTACDRNLDLRDHLRRRREFYGRPVTGFSRRRESSCLIIENQERLRTHCFDQRLSRRLMSEVGFNSLDSNGEGKTRSVFNRHRLFRHPRQHSPKRLQHYRENHGKQQFLPSRIFRKPFLKRRRYTPAPTDTAFHGPKTLAEIKEEKAAAAGRGHFNPATSADFQDPKPLSEILKGKKRLDCE 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g1083 529 FunFam Zinc finger CCCH domain-containing protein 17 1 63 - -
Mibi09g1083 529 SUPERFAMILY CCCH zinc finger 80 107 IPR036855 GO:0046872
Mibi09g1083 529 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 82 106 IPR000571 GO:0046872
Mibi09g1083 529 MobiDBLite consensus disorder prediction 493 529 - -
Mibi09g1083 529 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
Mibi09g1083 529 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Mibi09g1083 529 ProSiteProfiles Zinc finger C3H1-type profile. 80 107 IPR000571 GO:0046872
Mibi09g1083 529 MobiDBLite consensus disorder prediction 112 136 - -
Mibi09g1083 529 Gene3D - 71 168 - -
Mibi09g1083 529 Gene3D - 3 64 - -
Mibi09g1083 529 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 528 - -
Mibi09g1083 529 Pfam Zinc-finger containing family 7 63 IPR041686 -
Mibi09g1083 529 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Mibi09g1083 529 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Mibi09g1083 529 SMART c3hfinal6 80 106 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g1083 Mibi-ChrMibi09 24023402 24026692 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mibi09g1083 zf-CCCH_3 1.7e-10 CL0537