Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mibi09g1075 ATGGCTTGGTCGTCTAATGACGGTGGTTCTGGTAACTTCTCTGTCCAGAAATCGCCTCGTCCTACTCGTCCTTGCTATATTCCTCCTCACTTCAGGAACAATACCACGTCTGATTTCAACAATGGTTCAGCTCAGTCTGGTTTTGCTTCCTTTAACTCTTACAGTTCCAGACAACAAGCTAGAGGTGGTTCCTCTAATGGCCGTTTCGGTGGTCGTGGTCTTGGTCGTGGTAGAGGCCGGAACGAGCGCTTTCGTTCCCCTCCCCAGCCGATGTGGGACTTTACAATTGACACCACCACAGACAATTCCGTAAAAGATGATGCCGATGACGACGATGTCTGTGATGGTGGCATCAATTTTGACGCGTATGAGGATATCCCGGTGGAGGTTAGTGGTTCTAACGTGCCTCCGCCGGTGAATACCTTCGCGGAAATTGAGTTGAGTGAGGGTTTAAGCGTGAATATCAAGCGATGCAAGTACGTTAAGCCCACTCCGATTCAGCGTCATGCGATTCCTATTGCCCTTGCTGGTCGTGACTTGATGGCATGTGCTCAGACCGGGTCGGGTAAAACGGCGGCGTTTTGTTTTCCTATTATATCTGCGATTTTGAAGGGTCGTTCTAGGTTTTTGCCTACTGCTCGTGAAAGCTGGATTGCTTATCCCACTGCGCTTATAATGGCGCCAACTAGGGAGTTGTCTTGTCAGATTCATGATGAGGCTACGAAGTTTGCTTATCAGACTGGAGTGAAGATTGTTGCTGCTTATGGTGGGGCCCCGATTGCTCAACAGTTTCGTAATTTGGATAAAGGAGTGGACATCTTGGTTGCAACTCCTGGGCGCCTTGTTGATATGATTGAGAGAGGAAGGGTTTCACTCACACGAATAAAATTCCTTGCGCTTGATGAGGCAGATCGCATGTTGGACATGGGCTTTGAGCCTCAAATTAGGAAGATTGTTGAGCAAATGTGTATGCCTCTACCAGGTGCTAGACAGACTATGCTCTTCAGTGCTACGTTCCCAGATGATATACAGAAGCTGGCGGCGGACTTTCTTTCTAATTACATATTCTTAGCAATTGGAAGAGTTGGTTCTAGCACTGAATTGATTGTACAAAAAGTTGAACTTGTACAGGATATGGACAAAAGAGACCACCTTGTGGATCTTCTCCGTTCTCAAAGGGTAAATGGGTTAAATGGAAAGCAAGCTTTGACTCTAGTGTTTGTTGAAACAAAAAGAGGAGCAGATGCTTTGGAAAATTGGCTTTTGAGAAAAGGTTTTCCAGCTATTGCTATACATGGTGACAAAGTTCAAGTGGAGAGGGAAAGCGCCTTGAGATCTTTCAAAAGTGGTGCTAGGCCTATTTTGGTGGCAACCGATGTCGCTTCAAGGGGTTTAGACATACCACATGTTGCTCATGTTGTTAATTTTGACTTGCCGAAAGATATAGATGGTTACGTGCACAGAATTGGCCGAACTGGTCGTGCCGGCAAGTCTGGCTTGGCCACTGCTTTCTTCAGTGACAAAAACATCCCTCTTGCCAAAGCCCTTGCTGAACTCATGCAAGAATCGAACCAAAAGGTTCCCTCTTGGCTCATCCAATATGCAGAGAGTCCTTCATATGGTATGGCTAGCAGCAAAAGCGGCCAGTTGTATGGAAATGGCAAGTATGGCAGCCATGACTTTAGAAATACGATTCAACATGAAGAAGGGTATCACAGCCACTCAGTGGATTTAGGTTTTGCTGAGAACTATGTAACTGTAACTTCTGCTTCTGACATCTCTAATTCCTACAATGGTTCTTATGATATGGCAAACACAGTGCTTCCTCCTTGCAGCAATTACCATTATAGTGATGCTGACGCTACAAGTGGGAGAGCTGACGGGCTAAATGGGTATGTATCTGTTGTTCCTACTGGATGGGACTAG 1926 0.46 MAWSSNDGGSGNFSVQKSPRPTRPCYIPPHFRNNTTSDFNNGSAQSGFASFNSYSSRQQARGGSSNGRFGGRGLGRGRGRNERFRSPPQPMWDFTIDTTTDNSVKDDADDDDVCDGGINFDAYEDIPVEVSGSNVPPPVNTFAEIELSEGLSVNIKRCKYVKPTPIQRHAIPIALAGRDLMACAQTGSGKTAAFCFPIISAILKGRSRFLPTARESWIAYPTALIMAPTRELSCQIHDEATKFAYQTGVKIVAAYGGAPIAQQFRNLDKGVDILVATPGRLVDMIERGRVSLTRIKFLALDEADRMLDMGFEPQIRKIVEQMCMPLPGARQTMLFSATFPDDIQKLAADFLSNYIFLAIGRVGSSTELIVQKVELVQDMDKRDHLVDLLRSQRVNGLNGKQALTLVFVETKRGADALENWLLRKGFPAIAIHGDKVQVERESALRSFKSGARPILVATDVASRGLDIPHVAHVVNFDLPKDIDGYVHRIGRTGRAGKSGLATAFFSDKNIPLAKALAELMQESNQKVPSWLIQYAESPSYGMASSKSGQLYGNGKYGSHDFRNTIQHEEGYHSHSVDLGFAENYVTVTSASDISNSYNGSYDMANTVLPPCSNYHYSDADATSGRADGLNGYVSVVPTGWD 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mibi09g1075 641 MobiDBLite consensus disorder prediction 1 109 - -
Mibi09g1075 641 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 381 535 IPR001650 -
Mibi09g1075 641 CDD SF2_C_DEAD 369 505 - -
Mibi09g1075 641 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 171 357 IPR014001 -
Mibi09g1075 641 FunFam ATP-dependent RNA helicase RhlB 360 539 - -
Mibi09g1075 641 MobiDBLite consensus disorder prediction 29 65 - -
Mibi09g1075 641 Pfam DEAD/DEAH box helicase 164 346 IPR011545 GO:0003676|GO:0005524
Mibi09g1075 641 Pfam Helicase conserved C-terminal domain 381 496 IPR001650 -
Mibi09g1075 641 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 107 535 - -
Mibi09g1075 641 MobiDBLite consensus disorder prediction 1 19 - -
Mibi09g1075 641 FunFam Probable ATP-dependent RNA helicase DDX4 104 359 - -
Mibi09g1075 641 SMART ultradead3 159 372 IPR014001 -
Mibi09g1075 641 Gene3D - 95 359 IPR027417 -
Mibi09g1075 641 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 140 168 IPR014014 GO:0003724
Mibi09g1075 641 CDD DEADc_DDX3_DDX4 141 363 IPR044763 GO:0003724|GO:0005524
Mibi09g1075 641 SMART helicmild6 415 496 IPR001650 -
Mibi09g1075 641 Gene3D - 360 538 IPR027417 -
Mibi09g1075 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 222 514 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mibi09g1075 Mibi-ChrMibi09 23841939 23845533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mibi09g1075 138 528 Eukaryotic Initiation Factors Gene Family AT3G19760 31.633 2.68e-59 202